TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 4MZU designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4MZU_TYD_K_402 | 61% | 18% | 0.089 | 0.909 | 1.41 | 2.05 | 5 | 14 | 0 | 0 | 100% | 1 |
| 4MZU_TYD_E_402 | 61% | 13% | 0.093 | 0.914 | 1.47 | 2.4 | 6 | 15 | 4 | 0 | 100% | 1 |
| 4MZU_TYD_B_402 | 58% | 14% | 0.096 | 0.904 | 1.45 | 2.33 | 5 | 9 | 0 | 0 | 100% | 1 |
| 4MZU_TYD_I_402 | 51% | 12% | 0.101 | 0.882 | 1.38 | 2.67 | 3 | 11 | 0 | 0 | 100% | 1 |
| 4MZU_TYD_A_402 | 50% | 17% | 0.103 | 0.88 | 1.45 | 2.09 | 4 | 10 | 0 | 0 | 100% | 1 |
| 4MZU_TYD_F_402 | 42% | 14% | 0.118 | 0.866 | 1.45 | 2.31 | 5 | 14 | 2 | 0 | 100% | 1 |
| 4MZU_TYD_D_402 | 40% | 13% | 0.115 | 0.85 | 1.45 | 2.47 | 5 | 13 | 2 | 0 | 100% | 1 |
| 4MZU_TYD_L_402 | 35% | 16% | 0.123 | 0.84 | 1.38 | 2.18 | 4 | 13 | 1 | 0 | 100% | 1 |
| 4MZU_TYD_H_401 | 33% | 21% | 0.135 | 0.852 | 1.48 | 1.81 | 5 | 8 | 1 | 0 | 100% | 1 |
| 4MZU_TYD_C_402 | 33% | 11% | 0.13 | 0.843 | 1.37 | 2.8 | 4 | 12 | 0 | 0 | 100% | 1 |
| 4MZU_TYD_G_402 | 23% | 12% | 0.14 | 0.804 | 1.45 | 2.58 | 4 | 16 | 1 | 0 | 100% | 1 |
| 4MZU_TYD_J_402 | 18% | 13% | 0.149 | 0.784 | 1.49 | 2.35 | 4 | 10 | 0 | 0 | 100% | 1 |
| 3OTI_TYD_A_377 | 98% | 24% | 0.035 | 0.989 | 1.32 | 1.78 | 3 | 9 | 0 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 98% | 22% | 0.036 | 0.99 | 1.41 | 1.81 | 4 | 7 | 0 | 0 | 100% | 1 |
| 5WXK_TYD_A_401 | 97% | 21% | 0.037 | 0.987 | 1.33 | 1.94 | 3 | 6 | 0 | 0 | 100% | 1 |
| 1LVW_TYD_A_3002 | 96% | 30% | 0.041 | 0.984 | 1.78 | 1.05 | 4 | 2 | 0 | 0 | 100% | 1 |
| 3RYK_TYD_B_182 | 95% | 11% | 0.042 | 0.985 | 2.35 | 1.83 | 4 | 8 | 0 | 0 | 100% | 0.7 |














