GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 4M0L designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
4M0L_GDP_B_501 | 84% | 47% | 0.109 | 0.971 | 0.93 | 1.11 | 1 | 2 | 1 | 0 | 100% | 0.73 |
4M0L_GDP_D_501 | 84% | 46% | 0.112 | 0.974 | 0.99 | 1.11 | 1 | 2 | 0 | 0 | 100% | 0.74 |
4M0L_GDP_C_501 | 79% | 46% | 0.122 | 0.967 | 0.99 | 1.1 | 1 | 2 | 1 | 0 | 100% | 0.76 |
4M0L_GDP_A_501 | 78% | 44% | 0.123 | 0.965 | 0.96 | 1.18 | 1 | 2 | 3 | 0 | 100% | 0.76 |
4M0L_GDP_F_501 | 72% | 46% | 0.133 | 0.957 | 0.96 | 1.12 | 1 | 2 | 0 | 0 | 100% | 0.79 |
4M0L_GDP_E_501 | 68% | 46% | 0.135 | 0.946 | 0.95 | 1.12 | 1 | 1 | 0 | 0 | 100% | 0.78 |
4RD0_GDP_A_501 | 97% | 47% | 0.065 | 0.981 | 0.86 | 1.18 | - | 4 | 0 | 0 | 100% | 1 |
4RD1_GDP_A_502 | 95% | 45% | 0.075 | 0.978 | 0.92 | 1.2 | 1 | 3 | 0 | 0 | 100% | 17 |
6I5M_GDP_A_501 | 95% | 46% | 0.088 | 0.991 | 0.79 | 1.28 | 1 | 4 | 0 | 0 | 100% | 1 |
4RD3_GDP_A_502 | 92% | 45% | 0.084 | 0.975 | 0.88 | 1.24 | 1 | 5 | 0 | 0 | 100% | 1 |
4M4S_GDP_A_530 | 91% | 46% | 0.099 | 0.985 | 0.97 | 1.12 | 1 | 2 | 2 | 0 | 100% | 0.9557 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
5UQW_GDP_A_1002 | 100% | 47% | 0.04 | 0.99 | 1.04 | 1.01 | 2 | 2 | 0 | 0 | 100% | 1 |
6TAN_GDP_A_201 | 100% | 55% | 0.046 | 0.99 | 0.88 | 0.86 | - | 1 | 0 | 0 | 100% | 1 |