UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 4KQM designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4KQM_UDP_D_801 | 80% | 33% | 0.125 | 0.976 | 0.92 | 1.69 | 1 | 6 | 0 | 0 | 100% | 1 |
| 4KQM_UDP_A_801 | 73% | 29% | 0.145 | 0.974 | 1.02 | 1.81 | 2 | 6 | 0 | 0 | 100% | 1 |
| 4KQM_UDP_B_801 | 72% | 32% | 0.146 | 0.97 | 0.93 | 1.76 | 1 | 7 | 1 | 0 | 100% | 1 |
| 4KQM_UDP_C_803 | 57% | 31% | 0.193 | 0.971 | 0.99 | 1.73 | - | 7 | 3 | 0 | 100% | 1 |
| 5UW0_UDP_D_801 | 67% | 33% | 0.134 | 0.943 | 1.01 | 1.64 | 2 | 6 | 0 | 0 | 100% | 1 |
| 5UW4_UDP_C_802 | 65% | 40% | 0.161 | 0.963 | 0.96 | 1.36 | 1 | 5 | 1 | 0 | 100% | 1 |
| 5VNC_UDP_D_801 | 58% | 33% | 0.145 | 0.925 | 1.1 | 1.56 | 3 | 5 | 0 | 0 | 100% | 1 |
| 5SUL_UDP_A_801 | 54% | 29% | 0.18 | 0.944 | 0.99 | 1.81 | 1 | 7 | 1 | 0 | 100% | 1 |
| 5UX7_UDP_A_801 | 41% | 26% | 0.177 | 0.89 | 1.27 | 1.72 | 3 | 8 | 0 | 0 | 100% | 0.9 |
| 8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
| 8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
| 2IV7_UDP_A_1372 | 100% | 40% | 0.035 | 0.984 | 0.85 | 1.49 | - | 4 | 0 | 0 | 100% | 1 |
| 4PHR_UDP_A_301 | 100% | 42% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
