GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 4JVS designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4JVS_GDP_B_400 | 50% | 20% | 0.177 | 0.927 | 1.81 | 1.6 | 5 | 7 | 3 | 0 | 100% | 1 |
| 4FMB_GDP_B_202 | 98% | 14% | 0.051 | 0.977 | 1.98 | 1.92 | 5 | 5 | 4 | 0 | 100% | 1 |
| 7EQ2_GDP_B_201 | 98% | 47% | 0.063 | 0.988 | 0.93 | 1.12 | - | 1 | 0 | 0 | 100% | 1 |
| 4IRU_GDP_B_202 | 98% | 39% | 0.059 | 0.981 | 1.21 | 1.16 | 3 | 3 | 4 | 0 | 100% | 1 |
| 3SFV_GDP_A_200 | 97% | 41% | 0.069 | 0.981 | 0.94 | 1.33 | 1 | 7 | 0 | 0 | 100% | 1 |
| 4FMC_GDP_B_202 | 72% | 19% | 0.164 | 0.989 | 1.72 | 1.71 | 3 | 6 | 1 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
| 4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 8V3A_GDP_B_201 | 100% | 42% | 0.036 | 0.991 | 1.1 | 1.14 | 1 | 2 | 0 | 0 | 100% | 1 |
