D5M: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
D5M is a Ligand Of Interest in 4GYZ designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4GYZ_D5M_C_402 | 78% | 25% | 0.079 | 0.971 | 1.82 | 1.27 | 8 | 2 | 0 | 0 | 100% | 1 |
| 4GYZ_D5M_D_402 | 71% | 25% | 0.088 | 0.952 | 1.81 | 1.29 | 8 | 3 | 0 | 0 | 100% | 1 |
| 4GYZ_D5M_H_401 | 66% | 25% | 0.102 | 0.956 | 1.81 | 1.29 | 8 | 2 | 0 | 0 | 100% | 1 |
| 4GYZ_D5M_E_401 | 62% | 25% | 0.113 | 0.952 | 1.82 | 1.29 | 8 | 3 | 0 | 0 | 100% | 1 |
| 4GYZ_D5M_A_401 | 58% | 24% | 0.126 | 0.959 | 1.84 | 1.3 | 8 | 3 | 0 | 0 | 100% | 1 |
| 4GYZ_D5M_B_401 | 53% | 24% | 0.134 | 0.945 | 1.82 | 1.3 | 8 | 3 | 0 | 0 | 100% | 1 |
| 3KIE_D5M_O_999 | 100% | 18% | 0.015 | 0.997 | 1.49 | 1.95 | 4 | 7 | 3 | 0 | 100% | 0.73 |
| 3KIC_D5M_L_999 | 100% | 17% | 0.016 | 0.996 | 1.49 | 2.01 | 4 | 9 | 2 | 0 | 100% | 0.7 |
| 6B42_D5M_A_201 | 96% | 27% | 0.04 | 0.987 | 1.33 | 1.62 | 4 | 7 | 0 | 0 | 100% | 1 |
| 24BS_D5M_A_401 | 95% | 70% | 0.043 | 0.982 | 0.57 | 0.44 | - | - | 0 | 0 | 100% | 1 |
| 2PAU_D5M_B_301 | 95% | 22% | 0.043 | 0.982 | 1.11 | 2.11 | 2 | 11 | 0 | 0 | 100% | 0.9 |














