GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 4EKD designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4EKD_GDP_A_401 | 53% | 38% | 0.212 | 0.975 | 1.06 | 1.36 | 2 | 2 | 1 | 0 | 100% | 1 |
| 5DO9_GDP_C_401 | 76% | 37% | 0.155 | 0.992 | 1.16 | 1.3 | 4 | 3 | 0 | 0 | 100% | 1 |
| 4QJ3_GDP_A_400 | 75% | 45% | 0.149 | 0.984 | 0.92 | 1.19 | 1 | 4 | 0 | 0 | 100% | 1 |
| 4GNK_GDP_C_401 | 73% | 43% | 0.151 | 0.979 | 0.93 | 1.28 | 1 | 5 | 1 | 0 | 100% | 1 |
| 4EKC_GDP_A_400 | 72% | 40% | 0.152 | 0.977 | 0.96 | 1.37 | 1 | 4 | 3 | 0 | 100% | 1 |
| 4QJ5_GDP_A_400 | 70% | 39% | 0.163 | 0.981 | 0.98 | 1.37 | 1 | 5 | 0 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
| 8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
