XYP: beta-D-xylopyranose

XYP is a Ligand Of Interest in 3VSV designated by the RCSB


Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
3VSV_XYP_D_702 83% 20% 0.094 0.9522.15 1.28 4 200100%1
3VSV_XYP_B_701 79% 23% 0.099 0.9432.03 1.2 4 100100%1
3VSV_XYP_A_701 77% 26% 0.102 0.9411.8 1.23 3 200100%1
3VSV_XYP_C_701 74% 18% 0.112 0.9422.35 1.25 5 200100%1
3VSV_XYP_D_701 35% 49% 0.153 0.8380.99 0.97 - -70100%1
3VSV_XYP_A_707 33% 41% 0.166 0.8450.97 1.32 1 170100%1
3VSV_XYP_B_704 30% 53% 0.184 0.8461.08 0.76 1 -00100%1
3VSV_XYP_D_703 23% 50% 0.189 0.8121.06 0.86 1 -10100%1
3VSV_XYP_A_706 22% 36% 0.203 0.8181.26 1.25 - 200100%1
3VSV_XYP_C_703 18% 45% 0.182 0.771.26 0.86 1 -00100%1
3VSV_XYP_D_707 18% 52% 0.195 0.7811.11 0.76 - 100100%1
3VSV_XYP_C_702 17% 54% 0.215 0.7971.04 0.75 - 100100%1
3VSV_XYP_D_705 17% 56% 0.201 0.7821.08 0.65 - -00100%1
3VSV_XYP_A_702 16% 52% 0.206 0.7721.09 0.78 1 -00100%1
3VSV_XYP_A_703 16% 47% 0.257 0.8241.16 0.88 1 100100%1
3VSV_XYP_A_705 16% 41% 0.255 0.8211.03 1.28 - 110100%1
3VSV_XYP_A_704 15% 56% 0.208 0.7681.02 0.7 1 -10100%1
3VSV_XYP_C_705 14% 40% 0.261 0.8121.1 1.23 1 220100%1
3VSV_XYP_B_703 13% 56% 0.302 0.8470.88 0.83 - 100100%1
3VSV_XYP_B_702 12% 43% 0.218 0.7471.16 1.04 1 200100%1
3VSV_XYP_D_706 10% 43% 0.249 0.7540.94 1.27 - 210100%1
3VSV_XYP_D_708 10% 37% 0.21 0.7121.38 1.08 2 100100%1
3VSV_XYP_B_705 10% 46% 0.244 0.7451.19 0.91 1 -00100%1
3VSV_XYP_B_706 9% 51% 0.232 0.7271.12 0.78 1 -00100%1
3VSV_XYP_C_704 7% 34% 0.212 0.671.51 1.12 2 200100%1
3VSV_XYP_D_704 7% 49% 0.311 0.7630.92 1.05 - 120100%1
1OD8_XYP_A_1311 100% 64% 0.047 0.9920.75 0.64 - -00100%1
1V0M_XYP_A_1304 100% 71% 0.035 0.9930.82 0.33 - -0090%0.9
8Y00_XYP_D_201 99% 28% 0.032 0.9860.63 2.19 - 71090%0.9
2WYS_XYP_A_1001 99% 38% 0.052 0.9830.69 1.7 - 430100%1
1V0N_XYP_A_1306 98% 60% 0.048 0.9890.76 0.78 - -0090%0.9