3VSV
XYP: beta-D-xylopyranose
XYP is a Ligand Of Interest in 3VSV designated by the RCSB
Best-fitted instance in this entry | |
Other instances in this entry |
Best-fitted instance in this entry | |
Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
---|---|---|---|---|---|---|---|---|---|---|---|---|
3VSV_XYP_D_702 | 83% | 20% | 0.094 | 0.952 | 2.15 | 1.28 | 4 | 2 | 0 | 0 | 100% | 1 |
3VSV_XYP_B_701 | 79% | 23% | 0.099 | 0.943 | 2.03 | 1.2 | 4 | 1 | 0 | 0 | 100% | 1 |
3VSV_XYP_A_701 | 77% | 26% | 0.102 | 0.941 | 1.8 | 1.23 | 3 | 2 | 0 | 0 | 100% | 1 |
3VSV_XYP_C_701 | 74% | 18% | 0.112 | 0.942 | 2.35 | 1.25 | 5 | 2 | 0 | 0 | 100% | 1 |
3VSV_XYP_D_701 | 35% | 49% | 0.153 | 0.838 | 0.99 | 0.97 | - | - | 7 | 0 | 100% | 1 |
3VSV_XYP_A_707 | 33% | 41% | 0.166 | 0.845 | 0.97 | 1.32 | 1 | 1 | 7 | 0 | 100% | 1 |
3VSV_XYP_B_704 | 30% | 53% | 0.184 | 0.846 | 1.08 | 0.76 | 1 | - | 0 | 0 | 100% | 1 |
3VSV_XYP_D_703 | 23% | 50% | 0.189 | 0.812 | 1.06 | 0.86 | 1 | - | 1 | 0 | 100% | 1 |
3VSV_XYP_A_706 | 22% | 36% | 0.203 | 0.818 | 1.26 | 1.25 | - | 2 | 0 | 0 | 100% | 1 |
3VSV_XYP_C_703 | 18% | 45% | 0.182 | 0.77 | 1.26 | 0.86 | 1 | - | 0 | 0 | 100% | 1 |
3VSV_XYP_D_707 | 18% | 52% | 0.195 | 0.781 | 1.11 | 0.76 | - | 1 | 0 | 0 | 100% | 1 |
3VSV_XYP_C_702 | 17% | 54% | 0.215 | 0.797 | 1.04 | 0.75 | - | 1 | 0 | 0 | 100% | 1 |
3VSV_XYP_D_705 | 17% | 56% | 0.201 | 0.782 | 1.08 | 0.65 | - | - | 0 | 0 | 100% | 1 |
3VSV_XYP_A_702 | 16% | 52% | 0.206 | 0.772 | 1.09 | 0.78 | 1 | - | 0 | 0 | 100% | 1 |
3VSV_XYP_A_703 | 16% | 47% | 0.257 | 0.824 | 1.16 | 0.88 | 1 | 1 | 0 | 0 | 100% | 1 |
3VSV_XYP_A_705 | 16% | 41% | 0.255 | 0.821 | 1.03 | 1.28 | - | 1 | 1 | 0 | 100% | 1 |
3VSV_XYP_A_704 | 15% | 56% | 0.208 | 0.768 | 1.02 | 0.7 | 1 | - | 1 | 0 | 100% | 1 |
3VSV_XYP_C_705 | 14% | 40% | 0.261 | 0.812 | 1.1 | 1.23 | 1 | 2 | 2 | 0 | 100% | 1 |
3VSV_XYP_B_703 | 13% | 56% | 0.302 | 0.847 | 0.88 | 0.83 | - | 1 | 0 | 0 | 100% | 1 |
3VSV_XYP_B_702 | 12% | 43% | 0.218 | 0.747 | 1.16 | 1.04 | 1 | 2 | 0 | 0 | 100% | 1 |
3VSV_XYP_D_706 | 10% | 43% | 0.249 | 0.754 | 0.94 | 1.27 | - | 2 | 1 | 0 | 100% | 1 |
3VSV_XYP_D_708 | 10% | 37% | 0.21 | 0.712 | 1.38 | 1.08 | 2 | 1 | 0 | 0 | 100% | 1 |
3VSV_XYP_B_705 | 10% | 46% | 0.244 | 0.745 | 1.19 | 0.91 | 1 | - | 0 | 0 | 100% | 1 |
3VSV_XYP_B_706 | 9% | 51% | 0.232 | 0.727 | 1.12 | 0.78 | 1 | - | 0 | 0 | 100% | 1 |
3VSV_XYP_C_704 | 7% | 34% | 0.212 | 0.67 | 1.51 | 1.12 | 2 | 2 | 0 | 0 | 100% | 1 |
3VSV_XYP_D_704 | 7% | 49% | 0.311 | 0.763 | 0.92 | 1.05 | - | 1 | 2 | 0 | 100% | 1 |
1OD8_XYP_A_1311 | 100% | 64% | 0.047 | 0.992 | 0.75 | 0.64 | - | - | 0 | 0 | 100% | 1 |
1V0M_XYP_A_1304 | 100% | 71% | 0.035 | 0.993 | 0.82 | 0.33 | - | - | 0 | 0 | 90% | 0.9 |
1V0N_XYP_A_1306 | 98% | 60% | 0.048 | 0.989 | 0.76 | 0.78 | - | - | 0 | 0 | 90% | 0.9 |
3C6Q_XYP_C_500 | 92% | 30% | 0.082 | 0.972 | 1.82 | 0.99 | 1 | 1 | 0 | 0 | 100% | 1 |
3MA0_XYP_A_400 | 91% | 42% | 0.093 | 0.981 | 0.91 | 1.32 | - | 2 | 0 | 0 | 100% | 1 |