XYS: alpha-D-xylopyranose
XYS is a Ligand Of Interest in 3VSV designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3VSV_XYS_B_708 | 57% | 45% | 0.1 | 0.907 | 1.34 | 0.7 | - | - | 0 | 0 | 100% | 1 |
| 3VSV_XYS_A_708 | 36% | 51% | 0.129 | 0.855 | 1.06 | 0.69 | - | - | 0 | 0 | 100% | 1 |
| 3VSV_XYS_C_706 | 34% | 49% | 0.129 | 0.842 | 1.13 | 0.75 | - | - | 0 | 0 | 100% | 1 |
| 3VSV_XYS_B_707 | 33% | 44% | 0.133 | 0.846 | 1.54 | 0.59 | 1 | - | 0 | 0 | 100% | 1 |
| 3VSV_XYS_C_707 | 19% | 42% | 0.15 | 0.794 | 1.61 | 0.58 | 2 | - | 2 | 0 | 100% | 1 |
| 3VSV_XYS_D_710 | 18% | 48% | 0.159 | 0.802 | 1.22 | 0.7 | - | - | 0 | 0 | 100% | 1 |
| 3VSV_XYS_D_709 | 15% | 38% | 0.165 | 0.788 | 1.69 | 0.71 | 2 | - | 3 | 0 | 100% | 1 |
| 3VSV_XYS_C_708 | 11% | 29% | 0.165 | 0.753 | 1.53 | 1.31 | 2 | 1 | 0 | 0 | 100% | 1 |
| 3VSV_XYS_A_709 | 4% | 44% | 0.188 | 0.681 | 1.34 | 0.74 | 1 | - | 4 | 0 | 100% | 1 |
| 1W9T_XYS_B_1146 | 98% | 42% | 0.033 | 0.988 | 0.79 | 1.34 | - | 1 | 3 | 0 | 100% | 0.5 |
| 2CDC_XYS_D_1371 | 97% | 51% | 0.037 | 0.984 | 0.87 | 0.89 | 1 | - | 0 | 0 | 100% | 1 |
| 8OZ1_XYS_A_804 | 95% | 58% | 0.031 | 0.99 | 0.82 | 0.62 | - | - | 0 | 0 | 90% | 1 |
| 7PLC_XYS_C_302 | 80% | 62% | 0.061 | 0.949 | 0.55 | 0.7 | - | - | 1 | 0 | 100% | 1 |
| 8BQA_XYS_AAA_402 | 77% | 36% | 0.059 | 0.955 | 0.8 | 1.66 | - | 2 | 0 | 0 | 90% | 1 |














