Ligand validation:3VDR

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
3VDR_NAD_C_301	58%	16%	0.103	0.929	1.63	2.02	12	16	10	100%	0.5
3VDR_NAD_B_303	53%	16%	0.106	0.91	1.59	2.02	12	16	11	100%	0.5
3VDR_NAD_D_302	42%	16%	0.122	0.882	1.6	1.98	13	14	10	100%	0.5
3VDR_NAD_A_303	39%	16%	0.129	0.878	1.6	2.01	11	14	11	100%	0.5
3W8F_NAD_A_301	97%	23%	0.037	0.988	1.58	1.6	10	13	1	100%	1
3W8D_NAD_A_301	96%	27%	0.037	0.984	1.44	1.52	7	7	1	100%	1
5B4V_NAD_A_301	94%	33%	0.043	0.983	1.09	1.52	4	14	1	100%	1
5B4T_NAD_A_301	93%	38%	0.045	0.983	0.98	1.37	2	10	2	100%	1
5B4U_NAD_A_301	92%	32%	0.047	0.98	1.1	1.56	6	11	1	100%	1
1DBV_NAD_O_336	100%	19%	0.012	0.999	1.39	1.98	5	12	0	100%	1
1OWB_NAD_A_3000	100%	7%	0.015	0.998	2.36	2.37	10	13	1	100%	1
9QJ0_NAD_A_501	100%	84%	0.015	0.998	0.35	0.36	-	-	2	100%	1
3CMC_NAD_R_408	100%	19%	0.016	0.998	1.58	1.84	4	15	0	100%	1
3UVE_NAD_B_300	100%	29%	0.016	0.998	1.2	1.63	4	14	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

3VDR | pdb_00003vdr