UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3UKK designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
3UKK_UDP_A_602 | 56% | 35% | 0.169 | 0.941 | 0.94 | 1.62 | 1 | 8 | 1 | 0 | 100% | 1 |
3UKK_UDP_B_602 | 47% | 37% | 0.181 | 0.922 | 0.92 | 1.53 | 1 | 7 | 1 | 0 | 100% | 1 |
3UKK_UDP_D_602 | 40% | 37% | 0.192 | 0.905 | 0.93 | 1.52 | 1 | 6 | 2 | 0 | 100% | 1 |
3UKK_UDP_C_602 | 13% | 37% | 0.263 | 0.802 | 0.92 | 1.52 | - | 6 | 2 | 0 | 100% | 1 |
3UTG_UDP_A_515 | 88% | 20% | 0.113 | 0.988 | 1.86 | 1.56 | 8 | 7 | 0 | 0 | 100% | 0.9 |
4U8N_UDP_B_602 | 84% | 19% | 0.124 | 0.985 | 1.85 | 1.59 | 8 | 9 | 0 | 0 | 100% | 1 |
3UKL_UDP_E_800 | 76% | 37% | 0.124 | 0.962 | 0.94 | 1.53 | 1 | 6 | 1 | 0 | 100% | 1 |
4U8O_UDP_B_602 | 75% | 16% | 0.126 | 0.96 | 2.05 | 1.63 | 9 | 8 | 2 | 0 | 100% | 0.91 |
4WX1_UDP_B_602 | 67% | 18% | 0.139 | 0.948 | 1.99 | 1.59 | 9 | 7 | 1 | 0 | 100% | 0.85 |
4PHR_UDP_A_301 | 100% | 42% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
2B69_UDP_A_900 | 100% | 42% | 0.046 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
1GX4_UDP_A_401 | 100% | 32% | 0.046 | 0.991 | 1.68 | 1.03 | 2 | 3 | 0 | 0 | 100% | 1 |
3U2V_UDP_B_270 | 99% | 33% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |
5GY7_UDP_A_401 | 99% | 40% | 0.049 | 0.989 | 1.09 | 1.23 | 1 | 3 | 0 | 0 | 100% | 1 |