GDU: GALACTOSE-URIDINE-5'-DIPHOSPHATE
GDU is a Ligand Of Interest in 3UKF designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
3UKF_GDU_A_802 | 68% | 15% | 0.156 | 0.967 | 1.93 | 1.83 | 12 | 11 | 2 | 0 | 100% | 1 |
3UKF_GDU_D_802 | 65% | 15% | 0.152 | 0.953 | 1.96 | 1.85 | 12 | 10 | 1 | 0 | 100% | 1 |
3UKF_GDU_B_802 | 62% | 15% | 0.16 | 0.952 | 1.92 | 1.85 | 12 | 10 | 1 | 0 | 100% | 1 |
3UKF_GDU_H_802 | 60% | 14% | 0.155 | 0.941 | 1.94 | 1.89 | 12 | 10 | 3 | 0 | 100% | 1 |
3UKF_GDU_C_802 | 59% | 15% | 0.168 | 0.952 | 1.95 | 1.85 | 12 | 10 | 1 | 0 | 100% | 1 |
3UKF_GDU_F_802 | 55% | 15% | 0.162 | 0.931 | 1.94 | 1.87 | 12 | 10 | 0 | 0 | 100% | 1 |
3UKF_GDU_G_802 | 54% | 15% | 0.175 | 0.94 | 1.94 | 1.85 | 12 | 10 | 1 | 0 | 100% | 1 |
3UKF_GDU_E_802 | 43% | 14% | 0.208 | 0.934 | 1.95 | 1.87 | 12 | 11 | 1 | 0 | 100% | 1 |
3UKP_GDU_D_602 | 65% | 13% | 0.151 | 0.953 | 2.03 | 1.96 | 9 | 15 | 3 | 0 | 100% | 1 |
3UTH_GDU_A_514 | 57% | 18% | 0.172 | 0.949 | 1.73 | 1.8 | 10 | 15 | 6 | 0 | 100% | 0.76 |
3UKQ_GDU_A_602 | 23% | 14% | 0.253 | 0.878 | 1.87 | 1.95 | 11 | 14 | 1 | 0 | 100% | 1 |
3UKH_GDU_C_521 | 4% | 15% | 0.465 | 0.849 | 1.94 | 1.81 | 11 | 10 | 7 | 0 | 100% | 0.55 |
4HO9_GDU_B_300 | 99% | 24% | 0.05 | 0.983 | 1.38 | 1.71 | 4 | 9 | 0 | 0 | 100% | 1 |
6GX0_GDU_A_402 | 97% | 47% | 0.067 | 0.98 | 0.81 | 1.22 | 1 | 6 | 0 | 0 | 100% | 0.6 |
5M7D_GDU_A_402 | 97% | 44% | 0.071 | 0.983 | 0.91 | 1.26 | 1 | 6 | 0 | 0 | 100% | 1 |
7YS9_GDU_A_404 | 91% | 78% | 0.087 | 0.974 | 0.39 | 0.51 | - | 1 | 1 | 0 | 100% | 0.4 |
4LW3_GDU_A_402 | 89% | 11% | 0.104 | 0.983 | 2.67 | 1.52 | 15 | 10 | 0 | 0 | 100% | 1 |