3TDK | pdb_00003tdk


UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE

Help
UPG is a Ligand Of Interest in 3TDK designated by the RCSB
Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with same target (top 5)
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
3TDK_UPG_J_501 78% 23% 0.078 0.9681.33 1.83 3 1260100%1
3TDK_UPG_L_501 76% 31% 0.077 0.9571 1.74 2 1050100%1
3TDK_UPG_B_501 75% 6% 0.085 0.9682.59 2.37 7 1670100%1
3TDK_UPG_H_501 75% 7% 0.084 0.9652.55 2.24 7 14110100%1
3TDK_UPG_A_501 74% 6% 0.087 0.9662.55 2.47 9 13100100%1
3TDK_UPG_D_501 73% 29% 0.088 0.9630.97 1.85 2 1150100%1
3TDK_UPG_C_501 72% 8% 0.09 0.9622.55 2.01 7 1380100%1
3TDK_UPG_G_501 70% 6% 0.094 0.9582.52 2.55 8 1680100%1
3TDK_UPG_I_501 69% 8% 0.093 0.9542.61 2.09 8 1530100%1
3TDK_UPG_E_501 65% 28% 0.095 0.941.06 1.83 5 970100%1
3TDK_UPG_K_501 64% 4% 0.095 0.9343.21 2.41 10 11150100%1
3TDK_UPG_F_501 60% 27% 0.104 0.9291.03 1.88 1 1260100%1
4EDF_UPG_B_501 100% 34% 0.023 0.9951.16 1.4 4 600100%1
3KHU_UPG_C_501 94% 23% 0.045 0.9821.28 1.88 3 1200100%1
2Q3E_UPG_A_501 90% 39% 0.054 0.9791.04 1.24 1 920100%1
6C4J_UPG_A_502 87% 34% 0.057 0.9721.22 1.37 2 510100%1
6C5Z_UPG_F_501 86% 35% 0.059 0.9711.2 1.35 2 620100%1
4Y6U_UPG_A_404 100% 28% 0.02 0.9971.16 1.72 3 1100100%1
5HUV_UPG_B_501 100% 7% 0.022 0.9972.91 1.99 11 1120100%1
4Y9X_UPG_A_404 100% 37% 0.024 0.9970.98 1.42 2 610100%1
6K8D_UPG_D_301 100% 60% 0.023 0.9950.45 0.87 - 300100%1
4HO8_UPG_C_300 99% 35% 0.026 0.9930.93 1.59 1 940100%1