Ligand validation:3PDE

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
3PDE_DMA_D_309	84%	38%	0.072	0.981	1.1	1.25	1	2	1	100%	1
3PDE_DMA_B_309	83%	43%	0.072	0.98	0.95	1.15	1	-	0	100%	1
3PDE_DMA_C_309	83%	36%	0.071	0.978	0.92	1.53	1	3	2	100%	1
3PDE_DMA_D_312	83%	32%	0.062	0.96	1.14	1.53	1	2	1	100%	1
3PDE_DMA_C_310	81%	39%	0.066	0.961	0.97	1.36	1	2	2	100%	1
3PDE_DMA_B_312	70%	35%	0.082	0.941	1.02	1.5	1	1	0	100%	1
3PDE_DMA_A_309	69%	33%	0.1	0.963	1.23	1.39	1	3	2	100%	1
3PDE_DMA_A_310	66%	37%	0.093	0.939	1.18	1.25	1	1	0	100%	1
3Q1O_DMA_A_501	93%	38%	0.051	0.988	0.9	1.45	1	2	1	100%	1
8JYC_DMA_C_501	93%	41%	0.053	0.989	0.71	1.46	-	4	0	100%	1
7VQA_DMA_A_301	92%	54%	0.052	0.986	0.88	0.75	-	-	0	100%	1
3OYR_DMA_B_336	91%	35%	0.055	0.983	0.98	1.54	1	5	0	100%	1
5YNT_DMA_A_401	88%	47%	0.065	0.99	1.06	0.92	-	-	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

3PDE | pdb_00003pde