D5M: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE

D5M is a Ligand Of Interest in 3KIE designated by the RCSB


Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with same target (top 5)
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
3KIE_D5M_T_999 20% 47% 0.29 0.8930.93 1.15 2 230100%0.73
3KIE_D5M_E_999 19% 46% 0.273 0.8680.93 1.16 2 230100%0.73
3KIE_D5M_O_999 13% 47% 0.311 0.8490.92 1.16 2 230100%0.73
3KIE_D5M_M_999 12% 47% 0.297 0.830.93 1.15 2 230100%0.73
3KIE_D5M_Q_999 11% 47% 0.29 0.8030.92 1.16 2 230100%0.73
3KIE_D5M_I_999 10% 47% 0.296 0.8020.92 1.16 1 230100%0.73
3KIE_D5M_N_999 8% 46% 0.334 0.8050.94 1.16 2 230100%0.73
3KIE_D5M_H_999 8% 47% 0.34 0.810.92 1.16 2 230100%0.73
3KIE_D5M_A_999 8% 46% 0.294 0.7620.93 1.16 2 230100%0.73
3KIE_D5M_C_999 6% 46% 0.4 0.8380.92 1.17 1 230100%0.73
3KIE_D5M_J_999 6% 46% 0.373 0.80.93 1.16 2 230100%0.73
3KIE_D5M_B_999 5% 47% 0.381 0.7990.92 1.16 1 230100%0.73
3KIE_D5M_K_999 5% 47% 0.383 0.80.92 1.16 2 230100%0.73
3KIE_D5M_F_999 5% 47% 0.372 0.7790.92 1.16 2 230100%0.73
3KIE_D5M_P_999 5% 47% 0.339 0.7340.92 1.15 2 230100%0.73
3KIE_D5M_R_999 4% 46% 0.399 0.7940.93 1.16 2 230100%0.73
3KIE_D5M_D_999 4% 47% 0.391 0.7530.93 1.15 2 230100%0.73
3KIE_D5M_L_999 2% 47% 0.401 0.7120.92 1.15 1 230100%0.73
3KIE_D5M_G_999 2% 47% 0.419 0.7180.93 1.15 2 230100%0.73
3KIE_D5M_S_999 1% 47% 0.48 0.7030.92 1.16 2 230100%0.73
3KIC_D5M_J_999 51% 44% 0.191 0.9450.92 1.3 1 310100%0.7
6B42_D5M_A_201 98% 52% 0.066 0.9860.82 1.04 1 200100%1
8HCG_D5M_A_306 95% 34% 0.078 0.9821.69 1.02 7 100100%1
2IOC_D5M_B_303 85% 14% 0.091 0.9552.71 1.35 3 200100%1
7A1F_D5M_A_403 74% 6% 0.122 0.9533.2 2.13 7 410100%1
2QRO_D5M_A_503 59% 35% 0.174 0.9580.93 1.73 1 460100%1