D5M: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
D5M is a Ligand Of Interest in 3KIC designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3KIC_D5M_J_999 | 50% | 40% | 0.191 | 0.945 | 0.92 | 1.3 | 1 | 3 | 1 | 0 | 100% | 0.7 |
| 3KIC_D5M_P_999 | 44% | 40% | 0.191 | 0.924 | 0.91 | 1.3 | 1 | 2 | 1 | 0 | 100% | 0.7 |
| 3KIC_D5M_C_999 | 43% | 40% | 0.216 | 0.945 | 0.91 | 1.3 | 1 | 3 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_K_999 | 41% | 40% | 0.194 | 0.915 | 0.91 | 1.3 | 1 | 2 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_Q_999 | 41% | 40% | 0.219 | 0.941 | 0.91 | 1.31 | 1 | 3 | 1 | 0 | 100% | 0.7 |
| 3KIC_D5M_A_999 | 39% | 40% | 0.228 | 0.942 | 0.91 | 1.3 | 1 | 3 | 1 | 0 | 100% | 0.7 |
| 3KIC_D5M_S_999 | 39% | 40% | 0.22 | 0.932 | 0.9 | 1.31 | 1 | 3 | 1 | 0 | 100% | 0.7 |
| 3KIC_D5M_G_999 | 36% | 40% | 0.233 | 0.933 | 0.91 | 1.3 | 1 | 2 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_I_999 | 35% | 40% | 0.231 | 0.929 | 0.91 | 1.3 | 1 | 2 | 1 | 0 | 100% | 0.7 |
| 3KIC_D5M_H_999 | 33% | 40% | 0.246 | 0.933 | 0.91 | 1.3 | 1 | 3 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_O_999 | 33% | 40% | 0.257 | 0.944 | 0.91 | 1.3 | 1 | 3 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_B_999 | 32% | 40% | 0.249 | 0.931 | 0.91 | 1.31 | 1 | 2 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_R_999 | 31% | 40% | 0.247 | 0.925 | 0.91 | 1.3 | 1 | 2 | 1 | 0 | 100% | 0.7 |
| 3KIC_D5M_L_999 | 30% | 40% | 0.265 | 0.94 | 0.91 | 1.31 | 1 | 3 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_D_999 | 30% | 40% | 0.233 | 0.905 | 0.92 | 1.3 | 1 | 2 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_F_999 | 30% | 40% | 0.257 | 0.93 | 0.91 | 1.3 | 1 | 2 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_T_999 | 21% | 40% | 0.3 | 0.924 | 0.91 | 1.31 | 1 | 3 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_N_999 | 21% | 40% | 0.279 | 0.899 | 0.91 | 1.31 | 1 | 3 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_M_999 | 20% | 40% | 0.313 | 0.933 | 0.91 | 1.31 | 1 | 3 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_E_999 | 14% | 40% | 0.299 | 0.866 | 0.92 | 1.3 | 1 | 2 | 2 | 0 | 100% | 0.7 |
| 3KIE_D5M_T_999 | 18% | 44% | 0.29 | 0.893 | 0.93 | 1.15 | 2 | 2 | 3 | 0 | 100% | 0.73 |
| 4IOV_D5M_A_801 | 98% | 51% | 0.06 | 0.992 | 0.67 | 1.1 | - | 3 | 4 | 0 | 100% | 0.7 |
| 6B42_D5M_A_201 | 96% | 49% | 0.066 | 0.986 | 0.82 | 1.04 | 1 | 2 | 0 | 0 | 100% | 1 |
| 8HCG_D5M_A_306 | 93% | 30% | 0.078 | 0.982 | 1.69 | 1.02 | 7 | 1 | 0 | 0 | 100% | 1 |
| 8PUU_D5M_B_301 | 91% | 4% | 0.076 | 0.968 | 4.14 | 1.46 | 8 | 2 | 0 | 0 | 100% | 1 |
| 6JNL_D5M_C_101 | 87% | 56% | 0.09 | 0.977 | 0.72 | 0.82 | - | 1 | 0 | 0 | 95% | 1 |














