Ligand validation:3KDN

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
3KDN_CAP_I_600	93%	50%	0.046	0.985	0.88	0.93	-	1	0	100%	1
3KDN_CAP_F_600	92%	49%	0.048	0.984	0.89	0.95	-	1	0	100%	1
3KDN_CAP_D_600	91%	48%	0.051	0.982	0.88	1.01	-	1	0	100%	1
3KDN_CAP_C_600	87%	48%	0.056	0.975	0.94	0.96	-	1	1	100%	1
3KDN_CAP_G_600	84%	49%	0.061	0.97	0.85	1	-	1	0	100%	1
3KDN_CAP_E_600	83%	48%	0.065	0.972	0.9	1.03	-	1	0	100%	1
3KDN_CAP_B_600	82%	47%	0.064	0.969	0.91	1.04	-	1	0	100%	1
3KDN_CAP_J_600	73%	47%	0.082	0.959	0.99	0.98	-	1	1	100%	1
3KDN_CAP_A_600	40%	46%	0.128	0.882	0.97	1.04	-	1	4	100%	1
3KDN_CAP_H_600	36%	47%	0.134	0.871	0.89	1.06	-	1	1	100%	1
3A12_CAP_D_446	95%	48%	0.043	0.988	0.89	1.04	-	1	1	100%	1
3WQP_CAP_A_502	87%	51%	0.057	0.977	0.71	1.04	-	1	0	100%	1
3KDO_CAP_D_600	85%	47%	0.062	0.975	0.9	1.07	-	1	0	100%	1
3A13_CAP_A_446	82%	42%	0.067	0.971	1	1.16	1	2	2	100%	1
5IU0_CAP_A_502	100%	45%	0.011	0.999	0.94	1.1	-	1	0	100%	1
5MZ2_CAP_A_902	100%	43%	0.013	0.999	0.9	1.22	1	2	0	100%	1
1BWV_CAP_A_491	100%	36%	0.014	0.998	1.05	1.43	-	4	1	100%	1
5N9Z_CAP_G_502	100%	42%	0.015	0.998	0.9	1.26	1	2	0	100%	1
5OYA_CAP_C_502	100%	48%	0.017	0.998	0.92	1	-	1	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

3KDN | pdb_00003kdn