TRD: TRIDECANE
TRD is a Ligand Of Interest in 3FYE designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3FYE_TRD_A_580 | 15% | 86% | 0.178 | 0.918 | 0.25 | 0.42 | - | - | 0 | 0 | 54% | 1 |
| 3FYE_TRD_D_1007 | 14% | 77% | 0.219 | 0.867 | 0.22 | 0.6 | - | - | 1 | 0 | 100% | 1 |
| 3FYE_TRD_A_579 | 12% | 84% | 0.219 | 0.848 | 0.28 | 0.43 | - | - | 0 | 0 | 100% | 1 |
| 3FYE_TRD_C_1010 | 6% | 85% | 0.21 | 0.831 | 0.29 | 0.39 | - | - | 1 | 0 | 69% | 1 |
| 3FYE_TRD_A_581 | 5% | 80% | 0.249 | 0.807 | 0.25 | 0.52 | - | - | 0 | 0 | 100% | 1 |
| 3FYE_TRD_C_1009 | 5% | 87% | 0.212 | 0.846 | 0.29 | 0.36 | - | - | 0 | 0 | 54% | 1 |
| 3FYE_TRD_A_578 | 5% | 81% | 0.26 | 0.804 | 0.27 | 0.49 | - | - | 1 | 0 | 100% | 1 |
| 3FYE_TRD_A_582 | 4% | 83% | 0.248 | 0.843 | 0.27 | 0.46 | - | - | 0 | 0 | 69% | 1 |
| 3FYE_TRD_C_1006 | 2% | 79% | 0.297 | 0.759 | 0.28 | 0.51 | - | - | 0 | 0 | 100% | 1 |
| 3FYE_TRD_D_1008 | 1% | 88% | 0.302 | 0.816 | 0.28 | 0.34 | - | - | 0 | 0 | 54% | 1 |
| 3FYE_TRD_B_289 | 0% | 89% | 0.314 | 0.73 | 0.31 | 0.29 | - | - | 1 | 0 | 54% | 1 |
| 3FYE_TRD_C_1001 | 0% | 83% | 0.38 | 0.716 | 0.28 | 0.45 | - | - | 0 | 0 | 100% | 1 |
| 3DTU_TRD_D_7 | 36% | 77% | 0.148 | 0.885 | 0.24 | 0.58 | - | - | 2 | 0 | 100% | 1 |
| 2GSM_TRD_A_5006 | 32% | 77% | 0.137 | 0.847 | 0.28 | 0.54 | - | - | 2 | 0 | 100% | 1 |
| 6PW0_TRD_D_303 | 30% | 70% | 0.148 | 0.927 | 0.12 | 0.85 | - | - | 0 | 0 | 69% | 1 |
| 6PW1_TRD_D_301 | 29% | 72% | 0.141 | 0.913 | 0.12 | 0.81 | - | - | 0 | 0 | 69% | 1 |
| 3OMI_TRD_A_610 | 19% | 80% | 0.167 | 0.823 | 0.36 | 0.43 | - | - | 1 | 0 | 100% | 1 |
| 6GA3_TRD_A_303 | 96% | 71% | 0.035 | 0.978 | 0.11 | 0.84 | - | - | 0 | 0 | 100% | 1 |
| 6GA5_TRD_A_303 | 92% | 73% | 0.042 | 0.966 | 0.1 | 0.79 | - | - | 3 | 0 | 100% | 1 |
| 6GAG_TRD_A_303 | 90% | 73% | 0.048 | 0.966 | 0.1 | 0.79 | - | - | 0 | 0 | 100% | 1 |
| 6GA7_TRD_A_303 | 89% | 73% | 0.05 | 0.967 | 0.1 | 0.79 | - | - | 0 | 0 | 100% | 1 |
| 6GAH_TRD_A_303 | 89% | 73% | 0.048 | 0.963 | 0.1 | 0.79 | - | - | 1 | 0 | 100% | 1 |














