TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 3FBC designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3FBC_TYD_C_138 | 41% | 21% | 0.119 | 0.864 | 1.42 | 1.85 | 4 | 7 | 2 | 0 | 100% | 1 |
| 3FBC_TYD_A_138 | 36% | 21% | 0.123 | 0.843 | 1.45 | 1.81 | 5 | 7 | 2 | 0 | 100% | 1 |
| 3FBC_TYD_F_138 | 28% | 22% | 0.128 | 0.81 | 1.51 | 1.74 | 5 | 6 | 3 | 0 | 100% | 1 |
| 3FBC_TYD_D_138 | 27% | 20% | 0.132 | 0.813 | 1.55 | 1.8 | 5 | 8 | 3 | 0 | 100% | 1 |
| 3FBC_TYD_B_138 | 12% | 20% | 0.164 | 0.757 | 1.5 | 1.81 | 5 | 7 | 3 | 0 | 100% | 1 |
| 3FBC_TYD_E_138 | 9% | 21% | 0.157 | 0.709 | 1.46 | 1.83 | 5 | 6 | 2 | 0 | 100% | 1 |
| 3FBF_TYD_A_138 | 82% | 20% | 0.062 | 0.957 | 1.46 | 1.86 | 6 | 7 | 5 | 0 | 100% | 1 |
| 3EVW_TYD_C_138 | 79% | 19% | 0.072 | 0.961 | 1.46 | 1.92 | 5 | 9 | 4 | 0 | 100% | 1 |
| 2B8Q_TYD_C_162 | 75% | 19% | 0.079 | 0.955 | 1.31 | 2.08 | 3 | 11 | 4 | 0 | 100% | 1 |
| 3OTI_TYD_B_377 | 98% | 26% | 0.035 | 0.989 | 1.33 | 1.66 | 4 | 7 | 0 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 98% | 22% | 0.036 | 0.99 | 1.41 | 1.81 | 4 | 7 | 0 | 0 | 100% | 1 |
| 5WXK_TYD_A_401 | 97% | 21% | 0.037 | 0.987 | 1.33 | 1.94 | 3 | 6 | 0 | 0 | 100% | 1 |
| 1LVW_TYD_A_3002 | 96% | 30% | 0.041 | 0.984 | 1.78 | 1.05 | 4 | 2 | 0 | 0 | 100% | 1 |
| 3RYK_TYD_B_182 | 96% | 11% | 0.042 | 0.985 | 2.35 | 1.83 | 4 | 8 | 0 | 0 | 100% | 0.7 |














