KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid
KDO is a Ligand Of Interest in 3DUR designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3DUR_KDO_A_303 | 100% | 29% | 0.021 | 0.994 | 1.55 | 1.32 | 3 | 2 | 0 | 0 | 100% | 1 |
| 3DUR_KDO_D_303 | 100% | 37% | 0.024 | 0.991 | 1.23 | 1.23 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3DUU_KDO_B_114 | 81% | 43% | 0.087 | 0.938 | 1.01 | 1.21 | 1 | 1 | 0 | 0 | 100% | 1 |
| 3DUS_KDO_A_107 | 46% | 46% | 0.143 | 0.877 | 0.99 | 1.1 | 1 | 1 | 0 | 0 | 100% | 1 |
| 3DV6_KDO_B_114 | 27% | 33% | 0.182 | 0.828 | 1.01 | 1.62 | 1 | 2 | 6 | 1 | 100% | 1 |
| 3DV4_KDO_B_114 | 22% | 40% | 0.125 | 0.74 | 0.99 | 1.35 | 1 | 1 | 0 | 0 | 100% | 1 |
| 8FUX_KDO_A_405 | 97% | 8% | 0.054 | 0.982 | 2.76 | 1.86 | 3 | 8 | 0 | 0 | 94% | 0.9375 |
| 3K8D_KDO_D_1244 | 96% | 10% | 0.064 | 0.983 | 2.6 | 1.77 | 6 | 6 | 0 | 1 | 94% | 0.9375 |
| 3DUV_KDO_A_263 | 95% | 24% | 0.052 | 0.955 | 0.95 | 2.11 | 1 | 4 | 0 | 1 | 100% | 1 |
| 4PF6_KDO_A_401 | 94% | 29% | 0.086 | 0.987 | 1.85 | 1.03 | 4 | 1 | 0 | 0 | 100% | 1 |
| 3T4Y_KDO_B_303 | 90% | 18% | 0.073 | 0.955 | 2.06 | 1.52 | 6 | 4 | 0 | 0 | 100% | 1 |
