GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 2QA5 designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2QA5_GDP_A_316 | 72% | 27% | 0.076 | 0.939 | 1.14 | 1.82 | 3 | 8 | 7 | 0 | 100% | 1 |
| 2QA5_GDP_B_316 | 61% | 27% | 0.092 | 0.913 | 1.25 | 1.71 | 3 | 6 | 12 | 0 | 100% | 1 |
| 6UPQ_GDP_A_1401 | 94% | 30% | 0.044 | 0.981 | 1.13 | 1.65 | 2 | 6 | 0 | 0 | 100% | 1 |
| 6UPR_GDP_A_1401 | 85% | 28% | 0.062 | 0.968 | 1.17 | 1.7 | 3 | 6 | 0 | 0 | 100% | 1 |
| 6UPA_GDP_A_1401 | 78% | 27% | 0.071 | 0.954 | 1.17 | 1.78 | 3 | 6 | 0 | 0 | 100% | 1 |
| 2QNR_GDP_B_1401 | 74% | 28% | 0.078 | 0.949 | 1.3 | 1.59 | 3 | 11 | 2 | 0 | 100% | 1 |
| 2QAG_GDP_C_419 | 29% | 27% | 0.146 | 0.849 | 1.16 | 1.8 | 3 | 7 | 16 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 34% | 0.012 | 0.999 | 1.95 | 0.71 | 1 | 1 | 8 | 0 | 100% | 1 |
| 2CNW_GDP_F_1001 | 100% | 25% | 0.014 | 0.999 | 1.21 | 1.86 | 4 | 8 | 0 | 0 | 100% | 1 |
| 5V9L_GDP_B_201 | 100% | 35% | 0.013 | 0.998 | 0.98 | 1.53 | 1 | 7 | 0 | 0 | 100% | 1 |
| 6EG8_GDP_L_401 | 100% | 28% | 0.013 | 0.999 | 1.16 | 1.75 | 3 | 7 | 3 | 0 | 100% | 1 |
| 3ZY3_GDP_A_1384 | 100% | 28% | 0.014 | 0.998 | 1.13 | 1.74 | 3 | 8 | 1 | 0 | 100% | 1 |
