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Crystal structure of Sept2 G-domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 298 5% PEG 6000, 0.1M BICINE, pH 9.0, 0.1M Glycine, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.6 52.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 162.96 α = 90 b = 53.92 β = 128.37 c = 110.27 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2005-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9792 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 20 5.4 10431
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.4 3.5 98.2 0.34 14 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.4 19.79 9927 502 100 0.28144 0.27983 0.31 0.31391 0.3423 RANDOM 81.54
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.02 -0.23 0.77 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.36 r_dihedral_angle_3_deg 23.655 r_dihedral_angle_4_deg 13.125 r_dihedral_angle_1_deg 6.952 r_scangle_it 1.64 r_angle_refined_deg 1.589 r_scbond_it 0.91 r_mcangle_it 0.787 r_mcbond_it 0.44 r_nbtor_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.36 r_dihedral_angle_3_deg 23.655 r_dihedral_angle_4_deg 13.125 r_dihedral_angle_1_deg 6.952 r_scangle_it 1.64 r_angle_refined_deg 1.589 r_scbond_it 0.91 r_mcangle_it 0.787 r_mcbond_it 0.44 r_nbtor_refined 0.316 r_nbd_refined 0.26 r_symmetry_vdw_refined 0.229 r_xyhbond_nbd_refined 0.18 r_symmetry_hbond_refined 0.178 r_chiral_restr 0.106 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3564 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction