D12: DODECANE
D12 is a Ligand Of Interest in 2YNK designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2YNK_D12_A_1004 | 19% | 85% | 0.198 | 0.87 | 0.48 | 0.22 | - | - | 0 | 0 | 100% | 1 |
| 2YNK_D12_A_1008 | 17% | 84% | 0.224 | 0.904 | 0.32 | 0.4 | - | - | 0 | 0 | 100% | 1 |
| 2YNK_D12_A_1005 | 15% | 86% | 0.214 | 0.866 | 0.37 | 0.31 | - | - | 1 | 0 | 100% | 1 |
| 2YNK_D12_A_1007 | 11% | 82% | 0.199 | 0.804 | 0.36 | 0.39 | - | - | 0 | 0 | 100% | 1 |
| 2YNK_D12_A_1002 | 11% | 83% | 0.218 | 0.833 | 0.38 | 0.35 | - | - | 0 | 0 | 100% | 1 |
| 2YNK_D12_A_1003 | 9% | 87% | 0.247 | 0.862 | 0.38 | 0.28 | - | - | 1 | 0 | 100% | 1 |
| 2YNK_D12_A_1006 | 3% | 84% | 0.275 | 0.763 | 0.36 | 0.36 | - | - | 0 | 0 | 100% | 1 |
| 5IO7_D12_A_201 | 99% | 66% | 0.031 | 0.993 | 0.31 | 0.79 | - | - | 4 | 0 | 100% | 1 |
| 2XE5_D12_E_1346 | 96% | 83% | 0.038 | 0.984 | 0.4 | 0.34 | - | - | 1 | 0 | 100% | 1 |
| 7PGB_D12_o_303 | 95% | 67% | 0.046 | 0.987 | 0.31 | 0.77 | - | - | 2 | 0 | 100% | 1 |
| 3UTY_D12_A_501 | 91% | 62% | 0.058 | 0.988 | 0.22 | 1.03 | - | 1 | 0 | 0 | 100% | 1 |
| 3R9B_D12_A_509 | 86% | 70% | 0.069 | 0.984 | 0.34 | 0.64 | - | - | 0 | 0 | 100% | 1 |














