PLP: PYRIDOXAL-5'-PHOSPHATE
PLP is a Ligand Of Interest in 2RKB designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
2RKB_PLP_A_400 | 77% | 27% | 0.131 | 0.97 | 1.21 | 1.71 | 1 | 4 | 1 | 0 | 100% | 0.9375 |
2RKB_PLP_E_400 | 73% | 26% | 0.137 | 0.966 | 1.21 | 1.78 | - | 5 | 1 | 0 | 100% | 0.9375 |
2RKB_PLP_C_400 | 73% | 26% | 0.136 | 0.962 | 1.2 | 1.79 | 1 | 6 | 1 | 0 | 100% | 0.9375 |
2RKB_PLP_D_400 | 66% | 23% | 0.15 | 0.957 | 1.34 | 1.8 | 1 | 6 | 1 | 0 | 100% | 0.9375 |
2RKB_PLP_B_400 | 66% | 26% | 0.146 | 0.952 | 1.16 | 1.8 | - | 6 | 1 | 0 | 100% | 0.9375 |
2BIE_PLP_B_1361 | 100% | 29% | 0.039 | 0.989 | 1.43 | 1.39 | 4 | 3 | 1 | 0 | 100% | 0.9375 |
4NOG_PLP_A_501 | 100% | 38% | 0.042 | 0.992 | 1.24 | 1.18 | 3 | 1 | 0 | 0 | 100% | 1 |
3WQC_PLP_B_402 | 100% | 21% | 0.045 | 0.993 | 1.94 | 1.38 | 4 | 4 | 0 | 0 | 100% | 0.9375 |
4HT3_PLP_B_401 | 100% | 15% | 0.045 | 0.993 | 2.04 | 1.72 | 3 | 5 | 0 | 0 | 100% | 0.9375 |
1JF9_PLP_A_500 | 100% | 12% | 0.047 | 0.994 | 1.28 | 2.78 | 1 | 11 | 0 | 0 | 100% | 0.9375 |