UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 2QRO designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
2QRO_UDP_A_402 | 52% | 26% | 0.164 | 0.921 | 0.98 | 1.99 | - | 7 | 3 | 0 | 100% | 1 |
2QRO_UDP_B_402 | 50% | 26% | 0.155 | 0.906 | 0.95 | 1.99 | 1 | 7 | 4 | 0 | 100% | 1 |
2QRO_UDP_D_402 | 48% | 25% | 0.182 | 0.927 | 1.04 | 1.99 | 1 | 7 | 4 | 0 | 100% | 1 |
2QRO_UDP_C_402 | 36% | 26% | 0.217 | 0.911 | 0.98 | 1.99 | 1 | 7 | 4 | 0 | 100% | 1 |
2ZI6_UDP_A_4301 | 97% | 26% | 0.071 | 0.989 | 1.16 | 1.84 | 1 | 8 | 1 | 0 | 100% | 1 |
7ZIA_UDP_A_301 | 96% | 30% | 0.077 | 0.988 | 1.15 | 1.65 | 3 | 6 | 0 | 0 | 100% | 1 |
2ZIA_UDP_B_301 | 96% | 27% | 0.075 | 0.984 | 1.18 | 1.72 | 4 | 7 | 0 | 0 | 100% | 1 |
4Q1E_UDP_B_303 | 96% | 34% | 0.078 | 0.985 | 1.14 | 1.46 | 3 | 4 | 1 | 0 | 100% | 1 |
2ZI5_UDP_B_2301 | 95% | 22% | 0.081 | 0.984 | 1.12 | 2.11 | 1 | 7 | 0 | 0 | 100% | 1 |
4PHR_UDP_A_301 | 100% | 42% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
2B69_UDP_A_900 | 100% | 42% | 0.046 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
1GX4_UDP_A_401 | 100% | 32% | 0.046 | 0.991 | 1.68 | 1.03 | 2 | 3 | 0 | 0 | 100% | 1 |
3U2V_UDP_B_270 | 99% | 33% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |
5GY7_UDP_A_401 | 99% | 40% | 0.049 | 0.989 | 1.09 | 1.23 | 1 | 3 | 0 | 0 | 100% | 1 |