TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 2PA7 designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2PA7_TYD_B_140 | 53% | 40% | 0.088 | 0.867 | 0.94 | 1.33 | 2 | 4 | 0 | 0 | 100% | 1 |
| 2PA7_TYD_A_141 | 5% | 32% | 0.201 | 0.714 | 1.27 | 1.43 | 1 | 6 | 0 | 0 | 100% | 1 |
| 2PAE_TYD_A_140 | 72% | 29% | 0.083 | 0.951 | 1.54 | 1.34 | 2 | 4 | 2 | 0 | 100% | 1 |
| 2PAM_TYD_B_140 | 72% | 33% | 0.084 | 0.951 | 1.5 | 1.17 | 1 | 5 | 1 | 0 | 100% | 1 |
| 2PAK_TYD_B_140 | 67% | 31% | 0.082 | 0.926 | 1.31 | 1.46 | 2 | 5 | 2 | 0 | 100% | 1 |
| 3OTI_TYD_B_377 | 98% | 26% | 0.035 | 0.989 | 1.33 | 1.66 | 4 | 7 | 0 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 98% | 22% | 0.036 | 0.99 | 1.41 | 1.81 | 4 | 7 | 0 | 0 | 100% | 1 |
| 5WXK_TYD_A_401 | 97% | 21% | 0.037 | 0.987 | 1.33 | 1.94 | 3 | 6 | 0 | 0 | 100% | 1 |
| 1LVW_TYD_A_3002 | 96% | 30% | 0.041 | 0.984 | 1.78 | 1.05 | 4 | 2 | 0 | 0 | 100% | 1 |
| 3RYK_TYD_B_182 | 96% | 11% | 0.042 | 0.985 | 2.35 | 1.83 | 4 | 8 | 0 | 0 | 100% | 0.7 |














