GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 2P2L designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2P2L_GDP_A_200 | 84% | 29% | 0.067 | 0.981 | 1.45 | 1.39 | 3 | 6 | 0 | 0 | 100% | 1 |
| 2P2L_GDP_C_200 | 83% | 34% | 0.069 | 0.979 | 0.99 | 1.6 | 1 | 6 | 0 | 0 | 100% | 1 |
| 2P2L_GDP_B_200 | 78% | 32% | 0.077 | 0.972 | 1.24 | 1.46 | 2 | 7 | 0 | 0 | 100% | 1 |
| 1HE1_GDP_C_200 | 97% | 40% | 0.037 | 0.989 | 1.21 | 1.07 | 3 | 3 | 0 | 0 | 100% | 1 |
| 2C2H_GDP_A_1178 | 90% | 31% | 0.052 | 0.979 | 1.2 | 1.54 | 2 | 9 | 0 | 0 | 100% | 1 |
| 5N6O_GDP_A_201 | 83% | 70% | 0.063 | 0.97 | 0.51 | 0.49 | 1 | - | 0 | 0 | 100% | 1 |
| 2IC5_GDP_B_502 | 79% | 28% | 0.075 | 0.973 | 1.3 | 1.6 | 3 | 6 | 0 | 0 | 100% | 1 |
| 8S1N_GDP_A_202 | 78% | 25% | 0.072 | 0.964 | 1.08 | 1.98 | 1 | 10 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 34% | 0.012 | 0.999 | 1.95 | 0.71 | 1 | 1 | 8 | 0 | 100% | 1 |
| 6EG8_GDP_L_401 | 100% | 28% | 0.013 | 0.999 | 1.16 | 1.75 | 3 | 7 | 3 | 0 | 100% | 1 |
| 2CNW_GDP_F_1001 | 100% | 25% | 0.014 | 0.999 | 1.21 | 1.86 | 4 | 8 | 0 | 0 | 100% | 1 |
| 5V9L_GDP_B_201 | 100% | 35% | 0.013 | 0.998 | 0.98 | 1.53 | 1 | 7 | 0 | 0 | 100% | 1 |
| 3ZY3_GDP_A_1384 | 100% | 28% | 0.014 | 0.998 | 1.13 | 1.74 | 3 | 8 | 1 | 0 | 100% | 1 |
