Ligand validation:2GD4

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 2GD4 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2GD4_NAG_C_501	5%	24%	0.264	0.67	0.95	2.15	1	3	1	0	100%	0.9333
2GD4_NAG_I_501	4%	24%	0.264	0.641	0.95	2.15	1	3	1	0	100%	0.9333
2GD4_NAG_C_701	1%	68%	0.471	0.688	0.63	0.61	-	-	0	0	100%	0.9333
2GD4_NAG_I_701	1%	68%	0.502	0.639	0.63	0.61	-	-	0	0	100%	0.9333
2B4X_NAG_L_841	44%	56%	0.167	0.894	0.68	0.99	-	2	4	0	100%	0.9333
4EB1_NAG_I_801	37%	68%	0.179	0.878	0.57	0.66	-	-	0	0	100%	0.9333
1LK6_NAG_I_841	36%	74%	0.205	0.9	0.44	0.58	-	-	8	0	100%	1
2B5T_NAG_I_801	33%	68%	0.209	0.889	0.56	0.66	-	-	0	0	100%	0.9333
1R1L_NAG_I_941	32%	76%	0.203	0.878	0.38	0.57	-	-	7	0	100%	1
5LDS_NAG_B_1007	100%	67%	0.022	0.995	0.48	0.79	-	-	0	0	100%	0.9333
6MUG_NAG_G_629	100%	76%	0.022	0.994	0.35	0.58	-	-	0	0	100%	0.9333
3PPS_NAG_B_760	100%	44%	0.028	0.993	0.57	1.57	-	3	0	0	100%	0.9333
5O59_NAG_A_601	100%	70%	0.024	0.993	0.3	0.85	-	-	0	0	100%	0.9333
5U7O_NAG_B_704	100%	88%	0.024	0.989	0.23	0.44	-	-	0	0	100%	0.9333

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.