UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 2FYB designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
2FYB_UDP_A_403 | 44% | 35% | 0.154 | 0.881 | 1.26 | 1.29 | 2 | 5 | 0 | 0 | 100% | 0.952 |
4EEM_UDP_A_403 | 65% | 29% | 0.119 | 0.92 | 1.09 | 1.71 | 1 | 8 | 1 | 0 | 100% | 1 |
4EE5_UDP_B_404 | 60% | 25% | 0.122 | 0.907 | 1 | 2.04 | 1 | 8 | 0 | 0 | 100% | 1 |
4EEO_UDP_A_403 | 54% | 32% | 0.142 | 0.905 | 1.09 | 1.61 | 1 | 6 | 0 | 0 | 100% | 1 |
4EEG_UDP_A_403 | 52% | 24% | 0.149 | 0.905 | 1.16 | 1.92 | 1 | 8 | 0 | 0 | 100% | 1 |
4EEA_UDP_B_404 | 27% | 28% | 0.192 | 0.841 | 1 | 1.87 | 1 | 9 | 0 | 0 | 100% | 1 |
4PHR_UDP_A_301 | 100% | 42% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
2B69_UDP_A_900 | 100% | 42% | 0.046 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
1GX4_UDP_A_401 | 100% | 32% | 0.046 | 0.991 | 1.68 | 1.03 | 2 | 3 | 0 | 0 | 100% | 1 |
3U2V_UDP_B_270 | 99% | 33% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |
5GY7_UDP_A_401 | 99% | 40% | 0.049 | 0.989 | 1.09 | 1.23 | 1 | 3 | 0 | 0 | 100% | 1 |