PLP: PYRIDOXAL-5'-PHOSPHATE
PLP is a Ligand Of Interest in 2D7Y designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
2D7Y_PLP_A_413 | 80% | 6% | 0.132 | 0.983 | 1.64 | 3.46 | 3 | 10 | 0 | 0 | 100% | 0.9375 |
8E9O_PLP_B_401 | 95% | 41% | 0.089 | 0.992 | 0.91 | 1.37 | 1 | 3 | 0 | 0 | 100% | 0.9375 |
8E9Q_PLP_B_401 | 94% | 41% | 0.089 | 0.99 | 0.96 | 1.32 | 1 | 4 | 0 | 0 | 100% | 0.9375 |
8E9M_PLP_A_401 | 94% | 44% | 0.088 | 0.988 | 0.93 | 1.24 | - | 2 | 0 | 0 | 100% | 0.9375 |
8E9D_PLP_B_402 | 93% | 18% | 0.085 | 0.98 | 1.79 | 1.76 | 2 | 6 | 0 | 0 | 100% | 0.9375 |
8E9U_PLP_B_401 | 92% | 41% | 0.097 | 0.99 | 1.16 | 1.12 | 2 | 2 | 1 | 0 | 100% | 1 |
2BIE_PLP_B_1361 | 100% | 28% | 0.039 | 0.989 | 1.48 | 1.39 | 4 | 3 | 1 | 0 | 100% | 0.9375 |
4NOG_PLP_A_501 | 100% | 38% | 0.042 | 0.992 | 1.24 | 1.18 | 3 | 1 | 0 | 0 | 100% | 1 |
3WQC_PLP_B_402 | 100% | 21% | 0.045 | 0.993 | 1.96 | 1.38 | 4 | 4 | 0 | 0 | 100% | 0.9375 |
4HT3_PLP_B_401 | 100% | 15% | 0.045 | 0.993 | 2.04 | 1.72 | 3 | 5 | 0 | 0 | 100% | 0.9375 |
1JF9_PLP_A_500 | 100% | 12% | 0.047 | 0.994 | 1.28 | 2.78 | 1 | 11 | 0 | 0 | 100% | 0.9375 |