XYS: alpha-D-xylopyranose
XYS is a Ligand Of Interest in 2BFG designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2BFG_XYS_H_1504 | 27% | 10% | 0.151 | 0.865 | 2.25 | 2.01 | 3 | 3 | 2 | 0 | 90% | 1 |
| 2BFG_XYS_B_1504 | 21% | 16% | 0.164 | 0.851 | 2.16 | 1.51 | 4 | 2 | 1 | 0 | 90% | 1 |
| 2BFG_XYS_A_1507 | 19% | 19% | 0.2 | 0.902 | 1.88 | 1.53 | 3 | 2 | 1 | 0 | 90% | 0.3 |
| 2BFG_XYS_F_1504 | 16% | 9% | 0.172 | 0.832 | 2.31 | 2.12 | 4 | 2 | 0 | 0 | 90% | 1 |
| 2BFG_XYS_E_1504 | 14% | 10% | 0.177 | 0.822 | 2.18 | 2.19 | 4 | 3 | 0 | 0 | 90% | 1 |
| 2BFG_XYS_G_1504 | 14% | 12% | 0.17 | 0.807 | 2.02 | 2.08 | 4 | 3 | 1 | 0 | 90% | 1 |
| 2BFG_XYS_D_1507 | 13% | 15% | 0.217 | 0.883 | 1.91 | 1.81 | 2 | 3 | 1 | 0 | 90% | 0.4 |
| 2BFG_XYS_C_1504 | 4% | 12% | 0.234 | 0.778 | 2.22 | 1.89 | 4 | 2 | 1 | 0 | 90% | 1 |
| 1W9T_XYS_B_1146 | 98% | 42% | 0.033 | 0.988 | 0.79 | 1.34 | - | 1 | 3 | 0 | 100% | 0.5 |
| 2CDC_XYS_D_1371 | 97% | 51% | 0.037 | 0.984 | 0.87 | 0.89 | 1 | - | 0 | 0 | 100% | 1 |
| 8OZ1_XYS_A_804 | 95% | 58% | 0.031 | 0.99 | 0.82 | 0.62 | - | - | 0 | 0 | 90% | 1 |
| 7PLC_XYS_C_302 | 80% | 62% | 0.061 | 0.949 | 0.55 | 0.7 | - | - | 1 | 0 | 100% | 1 |
| 8BQA_XYS_AAA_402 | 77% | 36% | 0.059 | 0.955 | 0.8 | 1.66 | - | 2 | 0 | 0 | 90% | 1 |
