TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 2B8Q designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 2B8Q_TYD_C_162 | 66% | 21% | 0.147 | 0.956 | 1.26 | 1.94 | 1 | 7 | 4 | 0 | 100% | 1 |
| 2B8Q_TYD_A_160 | 64% | 21% | 0.137 | 0.94 | 1.26 | 1.94 | 1 | 7 | 2 | 0 | 100% | 1 |
| 2B8Q_TYD_B_161 | 64% | 20% | 0.142 | 0.943 | 1.25 | 2 | 1 | 7 | 3 | 0 | 100% | 1 |
| 2B8Q_TYD_D_163 | 62% | 20% | 0.153 | 0.948 | 1.27 | 1.96 | 1 | 7 | 2 | 0 | 100% | 1 |
| 2B8Q_TYD_E_164 | 60% | 20% | 0.156 | 0.946 | 1.26 | 2.01 | 1 | 7 | 4 | 0 | 100% | 1 |
| 2B8Q_TYD_F_165 | 53% | 19% | 0.186 | 0.951 | 1.28 | 2.04 | 1 | 7 | 4 | 0 | 100% | 1 |
| 3FBF_TYD_A_138 | 82% | 29% | 0.11 | 0.97 | 0.99 | 1.72 | 1 | 3 | 5 | 0 | 100% | 1 |
| 3EVW_TYD_D_138 | 75% | 28% | 0.13 | 0.967 | 0.97 | 1.81 | 1 | 6 | 3 | 0 | 100% | 1 |
| 3FBC_TYD_D_138 | 26% | 29% | 0.245 | 0.897 | 1.09 | 1.63 | 1 | 3 | 3 | 0 | 100% | 1 |
| 3OTI_TYD_B_377 | 98% | 21% | 0.054 | 0.987 | 1.12 | 2.08 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 98% | 30% | 0.057 | 0.988 | 1 | 1.68 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5WXK_TYD_A_401 | 97% | 31% | 0.06 | 0.987 | 0.99 | 1.64 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3EM1_TYD_B_143 | 97% | 29% | 0.059 | 0.984 | 1.01 | 1.71 | 1 | 3 | 0 | 0 | 100% | 1 |
| 3RSC_TYD_A_397 | 97% | 37% | 0.055 | 0.977 | 0.74 | 1.61 | 1 | 3 | 0 | 0 | 100% | 1 |
