2B8Q | pdb_00002b8q


TYD: THYMIDINE-5'-DIPHOSPHATE

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TYD is a Ligand Of Interest in 2B8Q designated by the RCSB
Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with same target (top 5)
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
2B8Q_TYD_C_162 75% 19% 0.079 0.9551.31 2.08 3 1140100%1
2B8Q_TYD_D_163 70% 18% 0.083 0.9411.32 2.12 2 1120100%1
2B8Q_TYD_B_161 68% 19% 0.087 0.9391.31 2.09 3 1230100%1
2B8Q_TYD_A_160 68% 18% 0.086 0.9361.33 2.09 3 1130100%1
2B8Q_TYD_F_165 67% 18% 0.089 0.9381.32 2.14 2 1140100%1
2B8Q_TYD_E_164 60% 18% 0.094 0.9131.33 2.1 3 1140100%1
3FBF_TYD_A_138 82% 20% 0.062 0.9571.46 1.86 6 750100%1
3EVW_TYD_C_138 79% 19% 0.072 0.9611.46 1.92 5 940100%1
3FBC_TYD_C_138 41% 21% 0.119 0.8641.42 1.85 4 720100%1
3OTI_TYD_A_377 98% 24% 0.035 0.9891.32 1.78 3 900100%1
3EVO_TYD_A_160 98% 22% 0.036 0.991.41 1.81 4 700100%1
5WXK_TYD_A_401 97% 21% 0.037 0.9871.33 1.94 3 600100%1
1LVW_TYD_A_3002 96% 30% 0.041 0.9841.78 1.05 4 200100%1
3RYK_TYD_B_182 95% 11% 0.042 0.9852.35 1.83 4 800100%0.7