UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 1Y6F designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
1Y6F_UDP_B_601 | 90% | 68% | 0.098 | 0.982 | 0.58 | 0.67 | - | 1 | 1 | 0 | 100% | 1 |
1XV5_UDP_A_1402 | 96% | 58% | 0.063 | 0.974 | 1.03 | 0.6 | 1 | 1 | 1 | 0 | 100% | 1 |
1Y8Z_UDP_B_2001 | 94% | 70% | 0.074 | 0.973 | 0.58 | 0.58 | - | 1 | 1 | 0 | 100% | 1 |
1YA6_UDP_A_2001 | 94% | 70% | 0.083 | 0.982 | 0.57 | 0.58 | - | 1 | 0 | 0 | 100% | 1 |
1Y6G_UDP_B_2021 | 47% | 67% | 0.216 | 0.957 | 0.65 | 0.62 | - | 1 | 1 | 0 | 100% | 1 |
4PHR_UDP_A_301 | 100% | 42% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
2B69_UDP_A_900 | 100% | 42% | 0.046 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
1GX4_UDP_A_401 | 100% | 32% | 0.046 | 0.991 | 1.68 | 1.03 | 2 | 3 | 0 | 0 | 100% | 1 |
3U2V_UDP_B_270 | 99% | 33% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |
5GY7_UDP_A_401 | 99% | 40% | 0.049 | 0.989 | 1.09 | 1.23 | 1 | 3 | 0 | 0 | 100% | 1 |