UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 1M5R designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
1M5R_UDP_A_400 | 97% | 76% | 0.071 | 0.983 | 0.43 | 0.51 | - | - | 0 | 0 | 100% | 1 |
1M5R_UDP_B_401 | 93% | 77% | 0.086 | 0.981 | 0.43 | 0.48 | - | - | 1 | 0 | 100% | 1 |
1SXQ_UDP_A_400 | 99% | 65% | 0.053 | 0.986 | 0.81 | 0.55 | 1 | - | 0 | 0 | 100% | 1 |
1JIX_UDP_A_500 | 98% | 67% | 0.059 | 0.984 | 0.59 | 0.68 | - | 1 | 0 | 0 | 100% | 1 |
1JG6_UDP_A_400 | 97% | 66% | 0.062 | 0.979 | 0.57 | 0.74 | - | 1 | 0 | 0 | 100% | 1 |
1NVK_UDP_A_700 | 97% | 78% | 0.066 | 0.983 | 0.41 | 0.48 | - | - | 0 | 0 | 100% | 1 |
1C3J_UDP_A_353 | 97% | 54% | 0.071 | 0.986 | 1.2 | 0.59 | 4 | - | 0 | 0 | 100% | 1 |
8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
4PHR_UDP_A_301 | 100% | 42% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
2B69_UDP_A_900 | 100% | 42% | 0.046 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
1GX4_UDP_A_401 | 100% | 32% | 0.046 | 0.991 | 1.68 | 1.03 | 2 | 3 | 0 | 0 | 100% | 1 |
3U2V_UDP_B_270 | 99% | 33% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |