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Ferric-mycobactin receptor (FemA) in complex with pyochelin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9F2T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 PEG 4000, Magnesium acetate MES pH 6
Crystal Properties Matthews coefficient Solvent content 3.31 62.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.836 α = 89.959 b = 84.662 β = 118.666 c = 86.965 γ = 113.585
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2023-10-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.999 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 66.72 96.64 0.149 0.982 9.3 3.36 116549
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.03 2.07 74.9 0.721
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.031 66.72 116476 2007 96.58 0.183 0.1821 0.1826 0.2232 0.2244 23.121
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.987 -0.028 0.439 0.16 -0.441 -0.663
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.65 r_dihedral_angle_3_deg 13.394 r_dihedral_angle_2_deg 10.08 r_dihedral_angle_1_deg 7.858 r_lrange_it 7.462 r_lrange_other 7.388 r_scangle_it 5.374 r_scangle_other 5.374 r_scbond_it 4.717 r_scbond_other 4.345
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.65 r_dihedral_angle_3_deg 13.394 r_dihedral_angle_2_deg 10.08 r_dihedral_angle_1_deg 7.858 r_lrange_it 7.462 r_lrange_other 7.388 r_scangle_it 5.374 r_scangle_other 5.374 r_scbond_it 4.717 r_scbond_other 4.345 r_mcangle_it 3.562 r_mcangle_other 3.562 r_mcbond_it 2.6 r_mcbond_other 2.599 r_angle_refined_deg 2.273 r_angle_other_deg 0.752 r_nbd_other 0.219 r_symmetry_nbd_other 0.218 r_nbd_refined 0.209 r_xyhbond_nbd_refined 0.207 r_symmetry_nbd_refined 0.197 r_nbtor_refined 0.183 r_symmetry_xyhbond_nbd_refined 0.138 r_chiral_restr 0.109 r_symmetry_nbtor_other 0.097 r_symmetry_xyhbond_nbd_other 0.048 r_bond_refined_d 0.019 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10284 Nucleic Acid Atoms Solvent Atoms 740 Heterogen Atoms 333
Software Software Software Name Purpose REFMAC refinement DIALS data reduction DIALS data scaling PHASER phasing