9EY3

The FK1 domain of FKBP51 in complex with (3S,11S,11aS)-12-((3,5-dichlorophenyl)sulfonyl)-5-oxo-11-vinyldecahydro-1H-6,10-epiminopyrrolo[1,2-a]azonine-3-carboxylic acid

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5OBK

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	34% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5

Crystal Properties
Matthews coefficient	Solvent content
2.31	46.71

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 42.077	α = 90
b = 54.553	β = 90
c = 56.322	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 X CdTe 16M		2023-09-08	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-1	0.885603	ESRF	ID23-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.16	56.32	86.5	0.064	0.074	0.038	0.997	17.8	7.1		39328

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.16	1.18			0.187	0.217	0.109	0.98		7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.16	33.732	39277	1867	86.149	0.14	0.1392	0.168	13.515

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.449			-0.233		0.683

RMS Deviations
Key	Refinement Restraint Deviation
r_lrange_it	17.005
r_dihedral_angle_6_deg	16.798
r_lrange_other	12.568
r_dihedral_angle_3_deg	10.217
r_dihedral_angle_1_deg	7.651
r_scangle_it	7.154
r_scangle_other	7.149
r_dihedral_angle_2_deg	6.232
r_scbond_it	5.095
r_mcangle_it	5.093
r_mcangle_other	5.093
r_scbond_other	5.091
r_rigid_bond_restr	3.911
r_mcbond_it	3.638
r_mcbond_other	3.527
r_angle_refined_deg	1.893
r_angle_other_deg	0.651
r_symmetry_xyhbond_nbd_refined	0.276
r_xyhbond_nbd_refined	0.27
r_nbd_other	0.247
r_symmetry_nbd_refined	0.227
r_nbd_refined	0.208
r_symmetry_nbd_other	0.198
r_nbtor_refined	0.182
r_chiral_restr	0.117
r_symmetry_nbtor_other	0.089
r_bond_refined_d	0.013
r_dihedral_angle_other_2_deg	0.012
r_gen_planes_refined	0.009
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	958
Nucleic Acid Atoms
Solvent Atoms	239
Heterogen Atoms	30

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing