9EX2

X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [V<sup>IV</sup>O(acac)<sub>2</sub>] in 1.1 M NaCl, 0.1 M sodium acetate at pH 4.0 (Structure C)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP42931.1 M NaCl, 0.1 M sodium acetate at pH 4.0
Crystal Properties
Matthews coefficientSolvent content
1.9837.97

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.33α = 90
b = 78.33β = 90
c = 37.05γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2023-05-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONELETTRA BEAMLINE 11.2C1.0ELETTRA11.2C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.1755.3999.10.1430.99615.323.141982
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.171.1999.91.2040.7962.416.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1.17255.38838859192399.0160.1570.15570.189115.88
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0920.092-0.184
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg17.486
r_dihedral_angle_3_deg12.45
r_dihedral_angle_2_deg7.833
r_dihedral_angle_1_deg6.814
r_rigid_bond_restr5.104
r_lrange_it3.731
r_scangle_it3.668
r_lrange_other3.493
r_scangle_other3.263
r_scbond_it3.252
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg17.486
r_dihedral_angle_3_deg12.45
r_dihedral_angle_2_deg7.833
r_dihedral_angle_1_deg6.814
r_rigid_bond_restr5.104
r_lrange_it3.731
r_scangle_it3.668
r_lrange_other3.493
r_scangle_other3.263
r_scbond_it3.252
r_scbond_other2.877
r_angle_refined_deg2.286
r_mcangle_it1.909
r_mcangle_other1.909
r_mcbond_it1.612
r_mcbond_other1.6
r_angle_other_deg0.644
r_nbd_refined0.279
r_nbd_other0.238
r_xyhbond_nbd_refined0.206
r_symmetry_xyhbond_nbd_other0.206
r_symmetry_nbd_other0.203
r_metal_ion_refined0.184
r_nbtor_refined0.183
r_symmetry_nbd_refined0.18
r_symmetry_xyhbond_nbd_refined0.18
r_chiral_restr0.102
r_symmetry_nbtor_other0.082
r_bond_refined_d0.016
r_gen_planes_refined0.01
r_bond_other_d0.003
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1001
Nucleic Acid Atoms
Solvent Atoms180
Heterogen Atoms94

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
autoPROCdata scaling
PHASERphasing