9EP8

Crystal structure of ROCK2 in complex with a 8-(azaindolyl)-benzoazepinone inhibitor


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelOtherProprietary structure

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293PEG6000, LiCl, MES/NaOH
Crystal Properties
Matthews coefficientSolvent content
2.4449.55

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 151.409α = 90
b = 134.292β = 109.71
c = 93.548γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2019-02-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.99989SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.6397.7595.80.03614.06250205
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.632.880.439

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.6397.744935485195.940.203120.202450.2418RANDOM88.116
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.99-1.65-0.182.67
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.425
r_dihedral_angle_4_deg18.63
r_dihedral_angle_3_deg14.079
r_long_range_B_refined11.539
r_long_range_B_other11.538
r_scangle_other9.612
r_mcangle_it9.127
r_mcangle_other9.126
r_scbond_it6.868
r_scbond_other6.868
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.425
r_dihedral_angle_4_deg18.63
r_dihedral_angle_3_deg14.079
r_long_range_B_refined11.539
r_long_range_B_other11.538
r_scangle_other9.612
r_mcangle_it9.127
r_mcangle_other9.126
r_scbond_it6.868
r_scbond_other6.868
r_dihedral_angle_1_deg6.723
r_mcbond_it6.562
r_mcbond_other6.56
r_angle_refined_deg1.615
r_angle_other_deg1.259
r_chiral_restr0.093
r_bond_refined_d0.012
r_gen_planes_refined0.006
r_bond_other_d0.003
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12379
Nucleic Acid Atoms
Solvent Atoms79
Heterogen Atoms112

Software

Software
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
REFMACrefinement
MOLREPphasing