Experiment: 9VOO

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3ATG

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	EVAPORATION	4.6	298	0.2M (NH4)2SO4, 0.1M NaCH3COO PH4.6, 30% w/v PEGME 2,000

Crystal Properties
Matthews coefficient	Solvent content
1.85	33.68

Symmetry
Space Group	P 63

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 S 9M		2022-10-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRF BEAMLINE BL02U1	0.979145	SSRF	BL02U1

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.76	63.931	99.9	0.137	0.996	10.4	4.1		18292

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.76	1.81	99.7		0.137	0.074	10.4

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.76	63.93	18292	922	99.84	0.16317	0.16118	0.1717	0.20339	0.2156	RANDOM	21.742

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
					0.02

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	13.853
r_dihedral_angle_2_deg	10.305
r_dihedral_angle_1_deg	8.255
r_long_range_B_refined	4.838
r_long_range_B_other	4.796
r_scangle_other	3.864
r_scbond_it	2.657
r_scbond_other	2.655
r_mcangle_it	2.58
r_mcangle_other	2.58

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	13.853
r_dihedral_angle_2_deg	10.305
r_dihedral_angle_1_deg	8.255
r_long_range_B_refined	4.838
r_long_range_B_other	4.796
r_scangle_other	3.864
r_scbond_it	2.657
r_scbond_other	2.655
r_mcangle_it	2.58
r_mcangle_other	2.58
r_mcbond_other	1.813
r_mcbond_it	1.812
r_angle_refined_deg	1.554
r_angle_other_deg	0.51
r_chiral_restr	0.073
r_gen_planes_refined	0.009
r_bond_refined_d	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1848
Nucleic Acid Atoms
Solvent Atoms	101
Heterogen Atoms	1