9VAW | pdb_00009vaw

Cryo-EM structure of human Neurotensin Receptor 1 (hNTSR1)-Gq (delipidated) complex in nucleotide-free C state


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_other17.415
r_long_range_B_refined17.404
r_dihedral_angle_3_deg13.098
r_scangle_other11.744
r_mcangle_it8.988
r_mcangle_other8.987
r_scbond_it7.302
r_scbond_other7.301
r_dihedral_angle_1_deg6.141
r_mcbond_it6.071
RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_other17.415
r_long_range_B_refined17.404
r_dihedral_angle_3_deg13.098
r_scangle_other11.744
r_mcangle_it8.988
r_mcangle_other8.987
r_scbond_it7.302
r_scbond_other7.301
r_dihedral_angle_1_deg6.141
r_mcbond_it6.071
r_mcbond_other6.069
r_dihedral_angle_2_deg3.141
r_angle_refined_deg1.061
r_angle_other_deg0.376
r_chiral_restr0.052
r_bond_refined_d0.005
r_gen_planes_refined0.005
r_gen_planes_other0.001
r_bond_other_d
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
JMV449-bound human Neurotensin Receptor 1 (hNTSR1)-GqiN18 complex in nucleotide-free C state with scFv16
Sample Components
JMV449-bound human neurotensin receptor type 1
heterotrimeric GqiN18 protein with delipidation mutations
scFv16
Specimen Preparation
Sample Aggregation StatePARTICLE
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles1092577
Reported Resolution (Å)2.24
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å**2)55
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)800
Maximum Defocus (nm)1600
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS2.7
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
NONE