9UPO | pdb_00009upo

Cryo-EM structure of macaque green cone pigment wild type

ELECTRON MICROSCOPY

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Refinement

RMS Deviations
Key	Refinement Restraint Deviation
r_lrange_it	21.13
r_lrange_other	21.129
r_dihedral_angle_2_deg	17.057
r_dihedral_angle_3_deg	13.689
r_mcangle_it	9.655
r_mcangle_other	9.651
r_scangle_it	8.915
r_scangle_other	8.912
r_dihedral_angle_6_deg	7.968
r_mcbond_it	5.348
r_mcbond_other	5.344
r_dihedral_angle_1_deg	5.343
r_scbond_it	4.687
r_scbond_other	4.685
r_angle_refined_deg	1.345
r_angle_other_deg	0.642
r_nbd_refined	0.218
r_nbtor_refined	0.183
r_symmetry_nbd_other	0.161
r_xyhbond_nbd_refined	0.125
r_chiral_restr	0.081
r_symmetry_nbtor_other	0.06
r_gen_planes_refined	0.006
r_bond_refined_d	0.005
r_gen_planes_other	0.003
r_bond_other_d	0.001

Sample
MG3 wild type

Specimen Preparation
Sample Aggregation State	PARTICLE
Vitrification Instrument	FEI VITROBOT MARK IV
Cryogen Name	ETHANE
Sample Vitrification Details

3D Reconstruction
Reconstruction Method	SINGLE PARTICLE
Number of Particles	103516
Reported Resolution (Å)	3.71
Resolution Method	FSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry Type	POINT

Map-Model Fitting and Refinement
Id	1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details

Data Acquisition
Detector Type	GATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å**2)	46.6

Imaging Experiment	1
Date of Experiment
Temperature (Kelvin)
Microscope Model	TFS KRIOS
Minimum Defocus (nm)	800
Maximum Defocus (nm)	1600
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS	2.7
Imaging Mode	BRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
Source	FIELD EMISSION GUN
Acceleration Voltage (kV)	300
Imaging Details

Image Processing
CTF Correction Type	CTF Correction Details	Number of Particles Selected	Particle Selection Details
NONE