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C. jejuni NrfA Sulfite Complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other low res model, SAD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 38% PEG 1000, 100 mM CHES/NAOH, pH9, Strontium chloride, soaked in 100 mM dithionite
Crystal Properties Matthews coefficient Solvent content 2.26 45.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.551 α = 90 b = 160.835 β = 116.52 c = 68.583 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-07-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 80.42 99.6 0.11 0.12 0.046 0.997 11.6 6.6 109123
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 99.8 0.607 0.658 0.253 0.86 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 80.42 109123 5759 99.61 0.17911 0.17874 0.1818 0.18602 0.1954 RANDOM 25.255
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 0.09 0.32 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.534 r_dihedral_angle_4_deg 13.749 r_dihedral_angle_3_deg 12.235 r_dihedral_angle_1_deg 5.348 r_long_range_B_refined 3.161 r_long_range_B_other 3.161 r_mcangle_it 1.242 r_mcangle_other 1.242 r_angle_refined_deg 1.191 r_scangle_other 1.121
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.534 r_dihedral_angle_4_deg 13.749 r_dihedral_angle_3_deg 12.235 r_dihedral_angle_1_deg 5.348 r_long_range_B_refined 3.161 r_long_range_B_other 3.161 r_mcangle_it 1.242 r_mcangle_other 1.242 r_angle_refined_deg 1.191 r_scangle_other 1.121 r_angle_other_deg 0.767 r_mcbond_it 0.69 r_mcbond_other 0.69 r_scbond_it 0.646 r_scbond_other 0.646 r_chiral_restr 0.087 r_gen_planes_refined 0.007 r_gen_planes_other 0.007 r_bond_refined_d 0.006 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9450 Nucleic Acid Atoms Solvent Atoms 547 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction MOLREP phasing PDB_EXTRACT data extraction