9TKT | pdb_00009tkt

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5EHR

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	20% (w/v) PEG 3350, 0.2M NaF, 0.1M Bis-Tris Propane pH 8.5

Crystal Properties
Matthews coefficient	Solvent content
2.19	43.95

Symmetry
Space Group	P 1 21 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2025-09-08	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	BESSY BEAMLINE 14.1	1.0332	BESSY	14.1

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.35	49.027	94.9	0.023	0.995	7.7	7.5		40753

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.35	2.49			0.246	0.427

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.35	49.027	40751	2038	94.92	0.243	0.2405	0.2513	0.2831	0.2887	55.472

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
6.32		-0.878	-4.244		-1.884

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.604
r_dihedral_angle_4_deg	19.533
r_dihedral_angle_3_deg	16.971
r_lrange_it	8.596
r_lrange_other	8.596
r_dihedral_angle_1_deg	6.838
r_mcangle_it	5.803
r_mcangle_other	5.803
r_scangle_it	5.327
r_scangle_other	5.326

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.604
r_dihedral_angle_4_deg	19.533
r_dihedral_angle_3_deg	16.971
r_lrange_it	8.596
r_lrange_other	8.596
r_dihedral_angle_1_deg	6.838
r_mcangle_it	5.803
r_mcangle_other	5.803
r_scangle_it	5.327
r_scangle_other	5.326
r_mcbond_it	3.497
r_mcbond_other	3.497
r_scbond_it	3.122
r_scbond_other	3.122
r_angle_refined_deg	1.288
r_angle_other_deg	1.111
r_nbd_refined	0.192
r_symmetry_nbd_other	0.176
r_nbd_other	0.162
r_nbtor_refined	0.158
r_xyhbond_nbd_refined	0.155
r_symmetry_nbd_refined	0.139
r_symmetry_nbtor_other	0.07
r_ncsr_local_group_1	0.068
r_chiral_restr	0.048
r_symmetry_xyhbond_nbd_refined	0.01
r_bond_refined_d	0.004
r_gen_planes_refined	0.004
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	8004
Nucleic Acid Atoms
Solvent Atoms	119
Heterogen Atoms	39

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.