Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
Phage 812 baseplate in the pre-contraction state - lower arm
ELECTRON MICROSCOPY
Sample
Staphylococcus phage 812K1/420
Specimen Preparation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
22031
Reported Resolution (Å)
5.6
Resolution Method
FSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry Type
POINT
Point Symmetry
C1
Map-Model Fitting and Refinement
Id
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
Overall B Value
191.1
Fitting Procedure
Details
Fitting of previously refined sub-models (e.g. segment A, segment B, segment C, segment DEF, uRBP1-lRBP2, lRBP1-uRBP2 from the lower arm) in ChimeraX ...
Fitting of previously refined sub-models (e.g. segment A, segment B, segment C, segment DEF, uRBP1-lRBP2, lRBP1-uRBP2 from the lower arm) in ChimeraX as rigid bodies, then relaxing the model using ISOLDE before rigid body refinement in Phenix (rigid bodies selected: lid domain of the weld protein, cleaver domains of the hub protein, res. 95-472 of arm scaffold protein and dimers of arm segments A, B and C, dimer of arm segment D, dimer of arm segment E, dimer of arm segment F, trimer of tripod proteins, trimer of RBP1, trimer of RBP2, res. 489-752 of arm scaffold protein).