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Bacteriodes thetaiotamicron sulphatase BT1636_S77C in complex with Molybdate Ions
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7AN1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 40% MPD, 5% PEG 8000, 100mM Sodium Cacodylate pH 6.5
Crystal Properties Matthews coefficient Solvent content 3.06 59.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.7 α = 90 b = 87.26 β = 90 c = 103.13 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2025-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.7601 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 51.56 100 0.105 0.114 0.042 0.999 10 13.7 132964
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.42 100 3.83 4.144 1.575 0.501 0.7 13.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.4 51.56 132870 6597 99.995 0.132 0.1308 0.1278 0.157 0.1544 RANDOM 24.043
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.779 1.036 -0.257
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.947 r_lrange_it 13.968 r_lrange_other 13.237 r_dihedral_angle_3_deg 12.905 r_scangle_it 11.588 r_scangle_other 11.486 r_rigid_bond_restr 9.523 r_scbond_it 8.484 r_scbond_other 8.431 r_mcangle_other 7.557
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.947 r_lrange_it 13.968 r_lrange_other 13.237 r_dihedral_angle_3_deg 12.905 r_scangle_it 11.588 r_scangle_other 11.486 r_rigid_bond_restr 9.523 r_scbond_it 8.484 r_scbond_other 8.431 r_mcangle_other 7.557 r_mcangle_it 7.533 r_dihedral_angle_1_deg 6.944 r_dihedral_angle_2_deg 6.477 r_mcbond_it 5.515 r_mcbond_other 5.51 r_angle_refined_deg 1.82 r_angle_other_deg 0.62 r_nbd_refined 0.211 r_symmetry_nbd_other 0.203 r_symmetry_xyhbond_nbd_refined 0.2 r_nbtor_refined 0.186 r_nbd_other 0.18 r_xyhbond_nbd_refined 0.172 r_metal_ion_refined 0.105 r_chiral_restr 0.098 r_symmetry_nbd_refined 0.087 r_symmetry_nbtor_other 0.086 r_gen_planes_other 0.022 r_bond_refined_d 0.011 r_gen_planes_refined 0.011 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3869 Nucleic Acid Atoms Solvent Atoms 457 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement Aimless data scaling DIMPLE phasing XDS data reduction