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Bacteriodes thetaiotamicron sulphatase BT1636_S77C in complex with Chromate Ions
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7AN1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 40% MPD, 5% PEG 8000, 100 mM Sodium Cacodylate pH 6.5
Crystal Properties Matthews coefficient Solvent content 3.08 60.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.651 α = 90 b = 87.594 β = 90 c = 103.322 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2025-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9537 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 66.81 100 0.108 0.116 0.044 0.999 10 13.6 75194
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.73 100 2.081 2.242 0.832 0.658 0.4 14.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.7 66.81 75119 3869 100 0.155 0.1528 0.1405 0.1943 0.1825 RANDOM 32.248
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.269 0.423 -0.693
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 15.515 r_dihedral_angle_6_deg 15.311 r_lrange_other 15.165 r_dihedral_angle_3_deg 12.295 r_scangle_it 12.232 r_scangle_other 12.23 r_mcangle_other 9.099 r_mcangle_it 9.098 r_scbond_it 8.636 r_scbond_other 8.634
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 15.515 r_dihedral_angle_6_deg 15.311 r_lrange_other 15.165 r_dihedral_angle_3_deg 12.295 r_scangle_it 12.232 r_scangle_other 12.23 r_mcangle_other 9.099 r_mcangle_it 9.098 r_scbond_it 8.636 r_scbond_other 8.634 r_dihedral_angle_1_deg 7.036 r_mcbond_it 6.555 r_mcbond_other 6.548 r_dihedral_angle_2_deg 6.177 r_rigid_bond_restr 3.684 r_angle_refined_deg 1.638 r_angle_other_deg 0.573 r_nbd_other 0.243 r_nbd_refined 0.205 r_symmetry_xyhbond_nbd_refined 0.203 r_symmetry_nbd_other 0.191 r_nbtor_refined 0.183 r_symmetry_nbd_refined 0.158 r_xyhbond_nbd_refined 0.144 r_metal_ion_refined 0.103 r_chiral_restr 0.083 r_symmetry_nbtor_other 0.083 r_symmetry_xyhbond_nbd_other 0.08 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3862 Nucleic Acid Atoms Solvent Atoms 300 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement REFMAC refinement Aimless data scaling DIMPLE phasing XDS data reduction