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Bacteriodes thetaiotamicron sulphatase BT1636_S77C in complex with Phosphate Ions
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7AN1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 40% MPD, 5% PEG 8000, 100 mM sodium cacodylate pH 6.5
Crystal Properties Matthews coefficient Solvent content 3.09 60.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.49 α = 90 b = 88.14 β = 90 c = 103.39 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2025-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.691 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 60.44 100 0.087 0.094 0.035 0.999 11.3 13.9 134250
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.42 100 1.997 2.167 0.838 0.609 1.2 13
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.4 60.44 134158 6674 99.993 0.123 0.122 0.1205 0.1447 0.144 RANDOM 21.904
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.711 0.921 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.925 r_lrange_it 13.801 r_lrange_other 12.453 r_dihedral_angle_3_deg 11.559 r_scangle_it 10.91 r_scangle_other 10.467 r_scbond_it 8.085 r_scbond_other 7.668 r_dihedral_angle_1_deg 7.105 r_dihedral_angle_2_deg 6.578
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.925 r_lrange_it 13.801 r_lrange_other 12.453 r_dihedral_angle_3_deg 11.559 r_scangle_it 10.91 r_scangle_other 10.467 r_scbond_it 8.085 r_scbond_other 7.668 r_dihedral_angle_1_deg 7.105 r_dihedral_angle_2_deg 6.578 r_mcangle_other 6.348 r_mcangle_it 6.344 r_mcbond_it 4.845 r_mcbond_other 4.825 r_rigid_bond_restr 4.267 r_angle_refined_deg 1.911 r_angle_other_deg 0.66 r_nbd_other 0.395 r_symmetry_nbd_refined 0.321 r_nbd_refined 0.218 r_symmetry_nbd_other 0.19 r_nbtor_refined 0.185 r_symmetry_xyhbond_nbd_refined 0.166 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.106 r_metal_ion_refined 0.101 r_symmetry_nbtor_other 0.089 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3862 Nucleic Acid Atoms Solvent Atoms 528 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement REFMAC refinement XDS data scaling DIMPLE phasing XDS data reduction