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TAF15 amyloid filament fold B variant 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.28 r_dihedral_angle_3_deg 11.099 r_lrange_other 6.547 r_lrange_it 6.528 r_dihedral_angle_1_deg 6.397 r_scangle_other 4.882 r_scangle_it 4.874 r_mcangle_it 3.244 r_mcangle_other 3.244 r_scbond_it 2.898
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.28 r_dihedral_angle_3_deg 11.099 r_lrange_other 6.547 r_lrange_it 6.528 r_dihedral_angle_1_deg 6.397 r_scangle_other 4.882 r_scangle_it 4.874 r_mcangle_it 3.244 r_mcangle_other 3.244 r_scbond_it 2.898 r_scbond_other 2.861 r_mcbond_it 1.87 r_mcbond_other 1.868 r_angle_refined_deg 1.017 r_angle_other_deg 0.376 r_nbd_other 0.214 r_symmetry_nbd_other 0.199 r_nbd_refined 0.196 r_nbtor_refined 0.189 r_symmetry_xyhbond_nbd_refined 0.124 r_symmetry_nbd_refined 0.114 r_symmetry_nbtor_other 0.077 r_xyhbond_nbd_refined 0.074 r_chiral_restr 0.058 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_gen_planes_other 0.001 r_bond_other_d
Sample TATA-binding protein-associated factor 2N
Specimen Preparation Sample Aggregation State FILAMENT Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method HELICAL Number of Particles 266924 Reported Resolution (Å) 1.64 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type HELICAL Axial Symmetry C1 Axial Rise 4.8 Angular Rotation -1.94558
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type TFS FALCON 4i (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 300 Maximum Defocus (nm) 1300 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION 5.0.1 RECONSTRUCTION RELION 5
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 850270