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DalDroS bound to the Escherichia coli 50S ribosomal subunit
Refinement RMS Deviations Key Refinement Restraint Deviation r_lrange_it 17.562 r_lrange_other 17.562 r_dihedral_angle_6_deg 13.678 r_dihedral_angle_3_deg 13.597 r_mcangle_other 13.006 r_mcangle_it 13.005 r_scangle_it 11.987 r_scangle_other 11.987 r_dihedral_angle_2_deg 8.058 r_mcbond_it 7.797
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 17.562 r_lrange_other 17.562 r_dihedral_angle_6_deg 13.678 r_dihedral_angle_3_deg 13.597 r_mcangle_other 13.006 r_mcangle_it 13.005 r_scangle_it 11.987 r_scangle_other 11.987 r_dihedral_angle_2_deg 8.058 r_mcbond_it 7.797 r_mcbond_other 7.796 r_dihedral_angle_1_deg 7.638 r_scbond_it 7.245 r_scbond_other 7.245 r_dihedral_angle_other_2_deg 1.627 r_angle_refined_deg 1.277 r_angle_other_deg 0.449 r_nbtor_refined 0.223 r_symmetry_nbd_other 0.173 r_nbd_refined 0.152 r_metal_ion_refined 0.152 r_xyhbond_nbd_refined 0.137 r_symmetry_nbtor_other 0.074 r_chiral_restr 0.056 r_symmetry_xyhbond_nbd_other 0.041 r_gen_planes_refined 0.013 r_bond_refined_d 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.001
Sample DalDroS bound to the 50S E. coli ribosomal subunit
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 202610 Reported Resolution (Å) 2.88 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 1.14
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 300 Maximum Defocus (nm) 900 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION crYOLO MODEL REFINEMENT REFMAC 5.8.0431 RECONSTRUCTION RELION 5.0.0
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION