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gamma carbonic anhydrase LreCA from Limosilactobacillus reuteri in space group I222
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold AF-A0A6B3Y2U8-F1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 296 0.2 M magnesium formate dihydrate and 20% w/v PEG3350
Crystal Properties Matthews coefficient Solvent content 2.49 50.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.568 α = 90 b = 98.747 β = 90 c = 127.308 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2025-01-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1.00 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 49.37 97.2 0.152 0.165 0.999 13 12.6 14160
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95 99.8 1.169 1.263 0.877 2.5 13.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 2.8 49.37 14159 701 97.206 0.195 0.1905 0.1947 0.2721 0.2554 67.805
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.816 2.145 3.672
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.092 r_dihedral_angle_4_deg 20.376 r_dihedral_angle_3_deg 20.36 r_lrange_it 12.578 r_lrange_other 12.547 r_scangle_it 9.101 r_scangle_other 9.101 r_dihedral_angle_1_deg 8.57 r_mcangle_it 8.433 r_mcangle_other 8.432
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.092 r_dihedral_angle_4_deg 20.376 r_dihedral_angle_3_deg 20.36 r_lrange_it 12.578 r_lrange_other 12.547 r_scangle_it 9.101 r_scangle_other 9.101 r_dihedral_angle_1_deg 8.57 r_mcangle_it 8.433 r_mcangle_other 8.432 r_scbond_it 5.934 r_scbond_other 5.934 r_mcbond_it 5.768 r_mcbond_other 5.767 r_angle_refined_deg 1.663 r_angle_other_deg 1.162 r_nbd_other 0.241 r_xyhbond_nbd_refined 0.232 r_symmetry_xyhbond_nbd_refined 0.211 r_symmetry_nbd_refined 0.21 r_nbd_refined 0.204 r_symmetry_nbd_other 0.195 r_symmetry_xyhbond_nbd_other 0.194 r_nbtor_refined 0.151 r_xyhbond_nbd_other 0.118 r_symmetry_nbtor_other 0.077 r_chiral_restr 0.068 r_metal_ion_refined 0.045 r_symmetry_metal_ion_refined 0.015 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4029 Nucleic Acid Atoms Solvent Atoms 20 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing