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Amuc0953 N-terminal domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Unpulished structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 20 % PEG 3350, 0.2 M NaI
25 mg/ml protein
Crystal Properties Matthews coefficient Solvent content 3.36 63.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.44 α = 90 b = 59.15 β = 95.11 c = 111.12 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.8 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 55.34 99.9 0.193 0.229 0.121 0.994 6.6 6.9 88190
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.04 99.9 2.063 2.433 1.28 0.364 1.2 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2 55.34 88175 4426 99.904 0.194 0.1921 0.202 0.2321 0.2396 44.953
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.878 0.645 -2.079 -1.885
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.793 r_dihedral_angle_3_deg 13.427 r_lrange_it 9.342 r_lrange_other 9.333 r_dihedral_angle_2_deg 8.333 r_scangle_it 7.706 r_scangle_other 7.633 r_dihedral_angle_1_deg 7.572 r_mcangle_other 5.097 r_mcangle_it 5.095
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.793 r_dihedral_angle_3_deg 13.427 r_lrange_it 9.342 r_lrange_other 9.333 r_dihedral_angle_2_deg 8.333 r_scangle_it 7.706 r_scangle_other 7.633 r_dihedral_angle_1_deg 7.572 r_mcangle_other 5.097 r_mcangle_it 5.095 r_scbond_it 4.999 r_scbond_other 4.904 r_mcbond_it 3.558 r_mcbond_other 3.558 r_angle_refined_deg 1.555 r_angle_other_deg 0.539 r_nbd_other 0.223 r_symmetry_nbd_refined 0.21 r_nbd_refined 0.199 r_symmetry_nbd_other 0.197 r_nbtor_refined 0.172 r_symmetry_xyhbond_nbd_refined 0.167 r_xyhbond_nbd_refined 0.138 r_symmetry_nbtor_other 0.087 r_chiral_restr 0.071 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6878 Nucleic Acid Atoms Solvent Atoms 265 Heterogen Atoms 77
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PHASER phasing